mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
38 lines
1 KiB
YAML
38 lines
1 KiB
YAML
name: rsem_preparereference
|
|
description: Prepare a reference genome for RSEM
|
|
keywords:
|
|
- rsem
|
|
- reference
|
|
tools:
|
|
- rseqc:
|
|
description: |
|
|
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
|
|
homepage: https://github.com/deweylab/RSEM
|
|
documentation: https://github.com/deweylab/RSEM
|
|
doi: https://doi.org/10.1186/1471-2105-12-323
|
|
licence: ['GPL-3.0-or-later']
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: The Fasta file of the reference genome
|
|
pattern: "*.{fasta,fa}"
|
|
- gtf:
|
|
type: file
|
|
description: The GTF file of the reference genome
|
|
pattern: "*.gtf"
|
|
output:
|
|
- rsem:
|
|
type: directory
|
|
description: RSEM index directory
|
|
pattern: "rsem"
|
|
- transcript_fasta:
|
|
type: file
|
|
description: Fasta file of transcripts
|
|
pattern: "rsem/*transcripts.fa"
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
authors:
|
|
- "@drpatelh"
|
|
- "@kevinmenden"
|