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18 lines
321 B
Text
18 lines
321 B
Text
process GENOMECOV {
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tag {bam}
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container 'quay.io/biocontainers/bedtools:2.29.2--hc088bd4_0'
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input:
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path (bam)
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path (fasta_sizes)
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val (genomecov_args)
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output:
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stdout()
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script:
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"""
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bedtools genomecov -ibam ${bam} -g ${fasta_sizes} ${genomecov_args}
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"""
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}
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