millironx/nf-core_modules
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nf-core_modules/modules/gatk4
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Edmund Miller f080015754
Prettier (#1405) 
* style: Add prettier config files

* build: Add prettier vscode extension

* ci: Replace markdownlint and yamllint with prettier

* style: Run prettier

* style: Use indent of 2 for markdown as well

https://github.com/nf-core/tools/pull/1470#issuecomment-1071028358

* style: Fix indent

* style: Let editorconfig take over tab widths

* style: yaml => yml

* ci: Run prettier once

Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>

Co-authored-by: Phil Ewels <phil.ewels@scilifelab.se>
2022-03-18 14:27:50 +01:00
..
applybqsr Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
applyvqsr Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
baserecalibrator Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
bedtointervallist Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
calculatecontamination Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
combinegvcfs Prettier (#1405) 2022-03-18 14:27:50 +01:00
createsequencedictionary Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
createsomaticpanelofnormals Update versions (#1292) 2022-02-15 11:29:36 +01:00
estimatelibrarycomplexity Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
fastqtosam Prettier (#1405) 2022-03-18 14:27:50 +01:00
filtermutectcalls Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
gatherbqsrreports Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
gatherpileupsummaries Prettier (#1405) 2022-03-18 14:27:50 +01:00
genomicsdbimport Update versions (#1292) 2022-02-15 11:29:36 +01:00
genotypegvcfs update priority (#1334) 2022-02-22 14:25:36 +01:00
getpileupsummaries Prettier (#1405) 2022-03-18 14:27:50 +01:00
haplotypecaller Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
indexfeaturefile Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
intervallisttobed intervallisttobed (#1312) 2022-02-17 16:32:26 +01:00
intervallisttools Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
learnreadorientationmodel Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
markduplicates Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
mergebamalignment Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
mergemutectstats add mergemutectstats (#1314) 2022-02-18 09:38:55 +01:00
mergevcfs Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
mutect2 Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
revertsam Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
samtofastq Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
selectvariants Gatk4 selectvariants (#1346) 2022-02-24 09:51:48 +01:00
splitncigarreads Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
variantfiltration Fix formatting in yaml files, add yamllint config (#1279) 2022-02-15 11:15:27 +00:00
variantrecalibrator Prettier (#1405) 2022-03-18 14:27:50 +01:00