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49 lines
1.2 KiB
YAML
49 lines
1.2 KiB
YAML
name: "genmod_score"
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description: Score the variants of a vcf based on their annotation
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keywords:
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- score
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- genmod
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tools:
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- "genmod":
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description: "Annotate genetic inheritance models in variant files"
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homepage: "https://github.com/Clinical-Genomics/genmod"
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documentation: "https://github.com/Clinical-Genomics/genmod"
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tool_dev_url: "https://github.com/moonso"
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doi: ""
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licence: "['MIT']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- input_vcf:
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type: file
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description: vcf file
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pattern: "*.{vcf}"
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- family_file:
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type: file
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description: ped file
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pattern: "*.{ped}"
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- score_config:
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type: file
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description: rank model config file
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pattern: "*.{ini}"
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- vcf:
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type: file
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description: Output VCF file
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pattern: "*.{vcf}"
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authors:
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- "@ramprasadn"
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