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09159edc9e
* samtools view update * remove csi output * prettier * update meta * add index functionality * prettier * fixed test checks
13 lines
339 B
Text
13 lines
339 B
Text
process {
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publishDir = { "${params.outdir}/${task.process.tokenize(':')[-1].tokenize('_')[0].toLowerCase()}" }
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withName: 'test_samtools_view_convert:SAMTOOLS_VIEW' {
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ext.args = "--output-fmt bam"
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}
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withName: 'test_samtools_view_index:SAMTOOLS_VIEW' {
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ext.args = "--output-fmt bam --write-index"
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}
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}
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