mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
12 lines
470 B
Text
12 lines
470 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { SALMON_INDEX } from '../../../../modules/salmon/index/main.nf' addParams( options: [publish_dir:'salmon'] )
|
|
|
|
workflow test_salmon_index {
|
|
genome_fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
|
|
transcript_fasta = file(params.test_data['sarscov2']['genome']['transcriptome_fasta'], checkIfExists: true)
|
|
|
|
SALMON_INDEX ( genome_fasta, transcript_fasta )
|
|
}
|