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f144171ddc
* Initial module creation * Update test.yml * Update test.yml * Update test.yml * Update meta.yml Co-authored-by: Cipriano <rrn8@cdc.gov> Co-authored-by: Maxime U. Garcia <max.u.garcia@gmail.com>
30 lines
751 B
Text
30 lines
751 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { FAQCS } from '../../../modules/faqcs/main.nf'
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//
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// Test with single-end data
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//
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workflow test_fastp_single_end {
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input = [ [ id:'test', single_end:true ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true) ]
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]
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FAQCS ( input )
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}
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//
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// Test with paired-end data
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//
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workflow test_fastp_paired_end {
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input = [ [ id:'test', single_end:false ], // meta map
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[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
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file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
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]
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FAQCS ( input )
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}
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