nf-core_modules/tests/modules/atlas/recal/test.yml at f62e4cf5f0ae77dad62027ba2a9f475192f5b123 - millironx/nf-core_modules - Milliron X Code: Code hosting for cattle or technology, but especially anything to do with both of them

millironx/nf-core_modules

mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-22 19:18:17 +00:00

Luca Traverso c9dc0a82d0

New Module: atlas/recal (#1915 )

* commit 08/07

* fixed formatting

* atlas recal commit - corrected formatting

* Fix tests

* Fix meta.yml

* Prettier

* Delete nextflow

* yaml > yml

* Delete meta.yaml

* Fix test

* Forgot to run prettier?

Co-authored-by: ltcrod <luca_traverso@kickseed.localdomain>
Co-authored-by: James A. Fellows Yates <jfy133@gmail.com>

2022-07-22 15:36:53 +02:00

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YAML

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 - name: atlas recal test_atlas_recal
   command: nextflow run ./tests/modules/atlas/recal -entry test_atlas_recal -c ./tests/config/nextflow.config  -c ./tests/modules/atlas/recal/nextflow.config
   tags:
     - atlas/recal
     - atlas
   files:
     - path: output/atlas/test_recalibrationEM.txt
       contains: ["readGroup"]