mirror of
https://github.com/MillironX/nf-core_modules.git
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37c6d4a1a1
* first commit
* single taxon input
* added .tsv output
* input: single taxon or file with taxon identifiers
* updated input and output
* removed wrong tool description
* added tests
* ext.args = '-l -b'
* fixed wrong input names
* updated test file
* Update modules/goat/taxonsearch/main.nf
simple version output
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
* removed 'NO_FILE' from input definition
* added ! in if statement
* optional input: empty list
* successful updated test
* added test with file
* remove blank spaces in include {}
* added test with taxa file
Co-authored-by: Matthieu Muffato <mm49@sanger.ac.uk>
26 lines
1.1 KiB
YAML
26 lines
1.1 KiB
YAML
- name: goat taxonsearch test_goat_taxonsearch_genus_name
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command: nextflow run ./tests/modules/goat/taxonsearch -entry test_goat_taxonsearch_genus_name -c ./tests/config/nextflow.config -c ./tests/modules/goat/taxonsearch/nextflow.config
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tags:
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- goat
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- goat/taxonsearch
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files:
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- path: output/goat/test_genus_name.tsv
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md5sum: e3de63a2bc2e16038aabeb325452bd16
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- name: goat taxonsearch test_goat_taxonsearch_genus_id
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command: nextflow run ./tests/modules/goat/taxonsearch -entry test_goat_taxonsearch_genus_id -c ./tests/config/nextflow.config -c ./tests/modules/goat/taxonsearch/nextflow.config
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tags:
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- goat
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- goat/taxonsearch
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files:
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- path: output/goat/test_genus_id.tsv
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md5sum: 2cc41abbbc21b4b66f4d5126cfbba2bc
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- name: goat taxonsearch test_goat_taxonsearch_species
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command: nextflow run ./tests/modules/goat/taxonsearch -entry test_goat_taxonsearch_species -c ./tests/config/nextflow.config -c ./tests/modules/goat/taxonsearch/nextflow.config
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tags:
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- goat
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- goat/taxonsearch
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files:
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- path: output/goat/test_species.tsv
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md5sum: 7f5b36414820bd3ce2bfda06d98e479c
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