mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-22 19:18:17 +00:00
e745e167c1
* fix yml formatting * allow fastq.gz and fq.gz as file input, add meta.yml and test * fix yaml files * Revert "allow fastq.gz and fq.gz as file input, add meta.yml and test" This reverts commit 34002d7a7a8c7f7bb4600c3377f35c87849f71a4. * prettier magic! * fix comments for yamllint * remove node version number * fix linting errors Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
50 lines
1.4 KiB
YAML
50 lines
1.4 KiB
YAML
name: nucmer
|
|
description: NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.
|
|
keywords:
|
|
- align
|
|
- nucleotide
|
|
tools:
|
|
- nucmer:
|
|
description: NUCmer is a pipeline for the alignment of multiple closely related nucleotide sequences.
|
|
homepage: http://mummer.sourceforge.net/
|
|
documentation: http://mummer.sourceforge.net/
|
|
tool_dev_url: http://mummer.sourceforge.net/
|
|
doi: "https://doi.org/10.1186/gb-2004-5-2-r12"
|
|
licence: ["The Artistic License"]
|
|
|
|
input:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- ref:
|
|
type: file
|
|
description: FASTA file of the reference sequence
|
|
pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}"
|
|
- query:
|
|
type: file
|
|
description: FASTA file of the query sequence
|
|
pattern: "*.{fasta,fasta.gz,fa,fa.gz,fna,fna.gz}"
|
|
|
|
output:
|
|
- meta:
|
|
type: map
|
|
description: |
|
|
Groovy Map containing sample information
|
|
e.g. [ id:'test', single_end:false ]
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- delta:
|
|
type: file
|
|
description: File containing coordinates of matches between reference and query
|
|
- coords:
|
|
type: file
|
|
description: NUCmer1.1 coords output file
|
|
pattern: "*.{coords}"
|
|
|
|
authors:
|
|
- "@sateeshperi"
|
|
- "@mjcipriano"
|