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32 lines
1.1 KiB
YAML
32 lines
1.1 KiB
YAML
- name: Run bwa index
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command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_index -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa_index
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files:
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- path: output/bwa/NC_010473.fa.amb
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md5sum: 942a990ae872f1c0b8d72dda2db405d5
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- path: output/bwa/NC_010473.fa.bwt
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md5sum: 7301b52e2ecb893d429a49fa692447ae
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- path: output/bwa/NC_010473.fa.pac
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md5sum: 4d5e6fc45bbc968f7f859e9ca2cc89ad
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- path: output/bwa/NC_010473.fa.sa
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md5sum: a47dcc92e750e2f16fbd979b8ff9538e
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- name: Run bwa mem single-end
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command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_mem_single_end -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa_mem
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files:
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- path: output/test_single_end/test.bam
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md5sum: 3ee21210bac387e0335008146e4728bc
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- name: Run bwa mem paired-end
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command: nextflow run ./tests/software/bwa -profile docker -entry test_bwa_mem_paired_end -c tests/config/nextflow.config
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tags:
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- bwa
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- bwa_mem
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files:
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- path: output/test_paired_end/test.bam
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md5sum: 510d8acc6448c07cdacce8e64ec0904c
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