nf-core_modules/tests/software/last/dotplot
Charles Plessy f7ebc2fc48
New last/dotplot module for pairwise similarity plots (#529)
* New last/dotplot module for pairwise similarity plots

The `last-dotplot` tool takes a pairwise alignment in
[MAF](http://genome.ucsc.edu/FAQ/FAQformat.html#format5) format,
possibly compressed with gzip, or in a tabular format produced by the
`maf-convert` tool, and produces a similarity dot-plot of the two
sequences in one of the graphical formats supported by the Python
Imaging Library.

A the tool guesses the output format by the file extension of the file,
which is constructed by the module at run time, I have used the `args2`
option to convey this information to the module.

This new module is part of the work described in Issue #464.  During
this development, we fix the version of LAST to 1219 to ensure
consistency (hence please ignore lint's version warning).

* Update the functions.nf file to the dev branch.

https://raw.githubusercontent.com/nf-core/tools/dev/nf_core/module-template/software/functions.nf
2021-06-08 11:13:51 +02:00
..
main.nf New last/dotplot module for pairwise similarity plots (#529) 2021-06-08 11:13:51 +02:00
test.yml New last/dotplot module for pairwise similarity plots (#529) 2021-06-08 11:13:51 +02:00