mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
b689b8ed88
add --skip_assembly when no bwa specified
43 lines
1.6 KiB
YAML
43 lines
1.6 KiB
YAML
- name: tiddit sv test_tiddit_sv_bam
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command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_bam -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
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tags:
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- tiddit
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- tiddit/sv
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files:
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- path: output/tiddit/test.ploidies.tab
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md5sum: 6319d3611f7b6b94425a184d274b3dfc
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- path: output/tiddit/test.vcf
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md5sum: 157907671297c34bacfd3e73eff9bbdf
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- name: tiddit sv test_tiddit_sv_cram
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command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
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tags:
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- tiddit
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- tiddit/sv
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files:
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- path: output/tiddit/test.ploidies.tab
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md5sum: f1162a940ddc8b963f6e0e506bb5c136
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- path: output/tiddit/test.vcf
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md5sum: 56687eeffa452f78f18d54a69dd17c78
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- name: tiddit sv test_tiddit_sv_nobwa_bam
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command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_nobwa_bam -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
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tags:
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- tiddit
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- tiddit/sv
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files:
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- path: output/tiddit/test.ploidies.tab
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md5sum: 6319d3611f7b6b94425a184d274b3dfc
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- path: output/tiddit/test.vcf
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md5sum: ddac94f9cd4f991b6ce2052d7f78a525
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- name: tiddit sv test_tiddit_sv_nobwa_cram
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command: nextflow run ./tests/modules/tiddit/sv -entry test_tiddit_sv_nobwa_cram -c ./tests/config/nextflow.config -c ./tests/modules/tiddit/sv/nextflow.config
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tags:
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- tiddit
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- tiddit/sv
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files:
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- path: output/tiddit/test.ploidies.tab
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md5sum: f1162a940ddc8b963f6e0e506bb5c136
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- path: output/tiddit/test.vcf
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md5sum: 680e60574cc28d38c9673a916ecd675c
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