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c9256616b9
* update tests for new config * fix quast, update more * more updates! * more tests updated * fix tests, added tabix gff3.gz * Delete main.nf Removing SPAdes from PR to avoid merge conflicts with https://github.com/nf-core/modules/pull/396 Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
13 lines
524 B
Text
13 lines
524 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BLAST_MAKEBLASTDB } from '../../../../software/blast/makeblastdb/main.nf' addParams( options: ['args': '-dbtype nucl'] )
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include { BLAST_BLASTN } from '../../../../software/blast/blastn/main.nf' addParams( options: [:] )
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workflow test_blast_blastn {
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input = [ file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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BLAST_MAKEBLASTDB ( input )
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BLAST_BLASTN ( [ [id:'test'], input ], BLAST_MAKEBLASTDB.out.db )
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}
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