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555f1710e0
* Update test paths in bwa mappers * Fix indentation * indices pass lcoally now * no idea how they could ever pass before, Tests pass locally no * Update samtools and bwamem2 versions * Correct mulled containers + md5
11 lines
292 B
Text
11 lines
292 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { BWA_INDEX } from '../../../../software/bwa/index/main.nf' addParams( options: [:] )
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workflow test_bwa_index {
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fasta = file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true)
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BWA_INDEX ( fasta )
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}
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