mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-11-11 04:33:10 +00:00
3aacd46da2
* backfilled modules with meta.yml that had no license identifier * harmonized BSD license names * whitespace linting at modules/unzip/meta.yml:12 * harmonized software from US NIH-NCBI/NIST to 'US-Government-Work' * Update modules/bcftools/index/meta.yml `bcftools` is dual-licensed, use associative array to allow for multiple licenses Co-authored-by: Michael L Heuer <heuermh@acm.org> Co-authored-by: Michael L Heuer <heuermh@acm.org>
39 lines
1.1 KiB
YAML
39 lines
1.1 KiB
YAML
name: cooler_digest
|
|
description: Generate fragment-delimited genomic bins
|
|
keywords:
|
|
- digest
|
|
- enzyme
|
|
tools:
|
|
- cooler:
|
|
description: Sparse binary format for genomic interaction matrices
|
|
homepage: https://cooler.readthedocs.io/en/latest/index.html
|
|
documentation: https://cooler.readthedocs.io/en/latest/index.html
|
|
tool_dev_url: https://github.com/open2c/cooler
|
|
doi: "10.1093/bioinformatics/btz540"
|
|
licence: ['BSD-3-Clause']
|
|
|
|
input:
|
|
- fasta:
|
|
type: file
|
|
description: Genome assembly FASTA file or folder containing FASTA files (uncompressed).
|
|
pattern: "*.{fasta,fa}"
|
|
- chromsizes:
|
|
type: file
|
|
description: Path to a chromsizes file.
|
|
- enzyme:
|
|
type: String
|
|
description: Name of restriction enzyme. e.g. CviQI.
|
|
documentation: http://biopython.org/DIST/docs/cookbook/Restriction.html
|
|
|
|
output:
|
|
- versions:
|
|
type: file
|
|
description: File containing software versions
|
|
pattern: "versions.yml"
|
|
- bed:
|
|
type: file
|
|
description: A genome segmentation of restriction fragments as a BED file.
|
|
pattern: "*.{bed}"
|
|
|
|
authors:
|
|
- "@jianhong"
|