nf-core_modules/software/fastqc/test/main.nf
2020-08-07 09:44:16 +01:00

39 lines
883 B
Text
Executable file

#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
params.outdir = "output/"
params.publish_dir_mode = "copy"
params.conda = false
include { FASTQC } from '../main.nf'
/*
* Test with single-end data
*/
workflow test_single_end {
def input = []
input = [ [ id:'test', single_end:true ], // meta map
[ file("${baseDir}/input/test_single_end.fastq.gz", checkIfExists: true) ] ]
FASTQC ( input, [ publish_dir:'test_single_end' ] )
}
/*
* Test with paired-end data
*/
workflow test_paired_end {
def input = []
input = [ [ id:'test', single_end:false ], // meta map
[ file("${baseDir}/input/test_R1.fastq.gz", checkIfExists: true),
file("${baseDir}/input/test_R2.fastq.gz", checkIfExists: true) ] ]
FASTQC ( input, [ publish_dir:'test_paired_end' ] )
}
workflow {
test_single_end()
test_paired_end()
}