mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
f4c69bc427
* bclconvert: initial commit * add most of tool * attempt at adding testing stub * add dockerfile + instructions * add container to module * update readme * more attempts at making stubs work * finish stub run * fix ci issues * more fixes to stub * add read version check to stub * fix some tests * update readme * fix version number * syntax fix * revert edit to output directory * Update modules/bclconvert/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * Update modules/bclconvert/meta.yml Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> * update meta.yaml * update thread usage * Update modules/bclconvert/main.nf Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> * Escape env variable * Update modules/bclconvert/Dockerfile Co-authored-by: Mark Whelan <7407040+MrMarkW@users.noreply.github.com> * fix comments by @Emiller88 * fix task.cpus Co-authored-by: James A. Fellows Yates <jfy133@gmail.com> Co-authored-by: Edmund Miller <edmund.a.miller@protonmail.com> Co-authored-by: Mark Whelan <7407040+MrMarkW@users.noreply.github.com>
52 lines
2.5 KiB
YAML
52 lines
2.5 KiB
YAML
- name: bclconvert test_bclconvert
|
|
command: nextflow run tests/modules/bclconvert -entry test_bclconvert -c tests/config/nextflow.config -stub-run
|
|
tags:
|
|
- bclconvert
|
|
files:
|
|
- path: output/bclconvert/InterOp/InterOp.bin
|
|
md5sum: d3dea0bb4ab1c8754af324f40b001481
|
|
- path: output/bclconvert/Logs/Errors.log
|
|
md5sum: 334645f09074b2597a692e395b716a9c
|
|
- path: output/bclconvert/Logs/FastqComplete.txt
|
|
md5sum: a4c4c6ce2d0de67d3b7ac7d1fcb512e4
|
|
- path: output/bclconvert/Logs/Info.log
|
|
md5sum: d238822d379f2277cac950ca986cb660
|
|
- path: output/bclconvert/Logs/Warnings.log
|
|
md5sum: aeefd2d631817e170f88f25ecaaf4664
|
|
- path: output/bclconvert/Reports/Adapter_Metrics.csv
|
|
md5sum: af62e9c7b44940cfd8ea11064a1f42ae
|
|
- path: output/bclconvert/Reports/Demultiplex_Stats.csv
|
|
md5sum: d11313931fcaabb5ce159462ad3dd1da
|
|
- path: output/bclconvert/Reports/IndexMetricsOut.bin
|
|
md5sum: 6bcee11c8145e3b1059ceaa91d2f5be7
|
|
- path: output/bclconvert/Reports/Index_Hopping_Counts.csv
|
|
md5sum: 697e40e0c0d48b4bd25f138ef60b0bde
|
|
- path: output/bclconvert/Reports/Quality_Metrics.csv
|
|
md5sum: 3902fd38f6b01f1ce0f0e8724238f8f2
|
|
- path: output/bclconvert/Reports/RunInfo.xml
|
|
md5sum: 5bef7c7e76360231b0c4afdfc915fd44
|
|
- path: output/bclconvert/Reports/SampleSheet.csv
|
|
md5sum: c579e7d2c9c917c4cfb875a0373c0936
|
|
- path: output/bclconvert/Reports/Top_Unknown_Barcodes.csv
|
|
md5sum: 39a5e7f6d21c12d6051afdc8261b6330
|
|
- path: output/bclconvert/Reports/fastq_list.csv
|
|
md5sum: 32c51ab10e013fd547928de57361ffcb
|
|
- path: output/bclconvert/sample1_S1_L001_R1_001.fastq.gz
|
|
md5sum: 9b831a39755935333f86f167527a094d
|
|
- path: output/bclconvert/sample1_S1_L001_R2_001.fastq.gz
|
|
md5sum: 082f4f767b7619f409ca7e752ef482bf
|
|
- path: output/bclconvert/sample1_S1_L002_R1_001.fastq.gz
|
|
md5sum: 837764c89db93dfb53cd663c4f26f3d7
|
|
- path: output/bclconvert/sample1_S1_L002_R2_001.fastq.gz
|
|
md5sum: 1a42cf6ba0bb8fc7770f278e6d1ab676
|
|
- path: output/bclconvert/sample2_S2_L001_R1_001.fastq.gz
|
|
md5sum: 475bc426b7cc48d0551d40e31457dc78
|
|
- path: output/bclconvert/sample2_S2_L001_R2_001.fastq.gz
|
|
md5sum: f670ccd7d9352e0e67fe1c1232429d94
|
|
- path: output/bclconvert/sample2_S2_L002_R1_001.fastq.gz
|
|
md5sum: ebd5ff6fa5603e7d704b5a10598de58c
|
|
- path: output/bclconvert/sample2_S2_L002_R2_001.fastq.gz
|
|
md5sum: 2f83b460f52620d2548c7ef8845b31d7
|
|
- path: output/stub/SampleSheet.csv
|
|
md5sum: c579e7d2c9c917c4cfb875a0373c0936
|
|
- path: output/bclconvert/versions.yml
|