mirror of
https://github.com/MillironX/nf-core_modules.git
synced 2024-12-23 03:28:17 +00:00
13bd67ed8a
* Fix paths for bowtie2/build_test * Fix paths for bowtie2/align * Fix paths for bwameth/index * Fix paths for bwameth/align * Fix paths for multiqc tests
16 lines
595 B
Text
16 lines
595 B
Text
#!/usr/bin/env nextflow
|
|
|
|
nextflow.enable.dsl = 2
|
|
|
|
include { FASTQC } from '../../../software/fastqc/main.nf' addParams( options: [:] )
|
|
include { MULTIQC } from '../../../software/multiqc/main.nf' addParams( options: [:] )
|
|
|
|
workflow test_multiqc {
|
|
input = [ [ id: 'test', single_end: false ],
|
|
[ file(params.test_data['sarscov2']['illumina']['test_1_fastq_gz'], checkIfExists: true),
|
|
file(params.test_data['sarscov2']['illumina']['test_2_fastq_gz'], checkIfExists: true) ]
|
|
]
|
|
|
|
FASTQC ( input )
|
|
MULTIQC ( FASTQC.out.zip.collect { it[1] } )
|
|
}
|