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fc4f3e8822
* add seqsero2 module * correct lint errors * Update modules/seqsero2/main.nf Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk> * set output directory Co-authored-by: Sébastien Guizard <sguizard@ed.ac.uk>
13 lines
368 B
Text
13 lines
368 B
Text
#!/usr/bin/env nextflow
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nextflow.enable.dsl = 2
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include { SEQSERO2 } from '../../../modules/seqsero2/main.nf' addParams( options: [args: '-m k -t 4'] )
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workflow test_seqsero2 {
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input = [ [ id:'test', single_end:false ], // meta map
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file(params.test_data['sarscov2']['genome']['genome_fasta'], checkIfExists: true) ]
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SEQSERO2 ( input )
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}
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