nf-core_modules/tests/modules/gatk4/indexfeaturefile/test.yml
FriederikeHanssen 967fb22ded
Update versions (#1292)
* Update versions

* update checksums + remove variables as input for applyvqsr

* sneak in removal of values and provide them via modules.config

* update another checksum

* more checksums

* move vairable to config

* remove controlfreec, wrong branch

* add line break
2022-02-15 11:29:36 +01:00

39 lines
1.7 KiB
YAML

- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed -c tests/config/nextflow.config -c ./tests/modules/gatk4/indexfeaturefile/nextflow.config
tags:
- gatk4
- gatk4/indexfeaturefile
files:
- path: output/gatk4/genome.bed.idx
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_bed_gz
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_bed_gz -c tests/config/nextflow.config -c ./tests/modules/gatk4/indexfeaturefile/nextflow.config
tags:
- gatk4
- gatk4/indexfeaturefile
files:
- path: output/gatk4/genome.bed.gz.tbi
md5sum: 4bc51e2351a6e83f20e13be75861f941
- path: output/gatk4/versions.yml
md5sum: e5003204702f83aabdb4141272c704d2
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf -c tests/config/nextflow.config -c ./tests/modules/gatk4/indexfeaturefile/nextflow.config
tags:
- gatk4
- gatk4/indexfeaturefile
files:
- path: output/gatk4/test.genome.vcf.idx
- path: output/gatk4/versions.yml
md5sum: 08cd7c49cfb752fc2905f600106a0345
- name: gatk4 indexfeaturefile test_gatk4_indexfeaturefile_vcf_gz
command: nextflow run tests/modules/gatk4/indexfeaturefile -entry test_gatk4_indexfeaturefile_vcf_gz -c tests/config/nextflow.config
tags:
- gatk4
- gatk4/indexfeaturefile
files:
- path: output/gatk4/test.genome.vcf.gz.tbi
md5sum: fedd68eaddf8d31257853d9da8325bd3
- path: output/gatk4/versions.yml
md5sum: b388d1681831a40264a7a27f67a8b247