millironx/nf-core_modules
1
0
Fork 0
mirror of https://github.com/MillironX/nf-core_modules.git synced 2024-12-31 03:32:10 -05:00
Code Issues Releases Packages Activity
nf-core_modules/modules/fastp
History
Adam Talbot 7e8ad56688
module FASTP: Support for interleaved FASTQ (#1891) 
* 1882 FASTP now supports interleaved FASTQ files

Changes:
 - single_end FASTP pipes the FASTQ file
 - Using args, it can be configured for interleaved in `--interleaved_in`
 - Out is automatically interleaved if input is paired end.
 - Removed md5sum checks for FASTQ files as compression seemed to cause
 differences
 - Instead, we check inside the FASTQ files for content.

Relates to #1882

Co-authored-by: Matthias De Smet <11850640+matthdsm@users.noreply.github.com>
2022-07-19 16:27:15 +01:00
..
main.nf module FASTP: Support for interleaved FASTQ (#1891) 2022-07-19 16:27:15 +01:00
meta.yml module FASTP: Support for interleaved FASTQ (#1891) 2022-07-19 16:27:15 +01:00