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2d38566eca
* fix: remove left-over unnecessary code * Add megan/rma2info * Attempt at fixing test * Right yml formatting * Get the versios reporting correct
51 lines
1.5 KiB
YAML
51 lines
1.5 KiB
YAML
name: "megan_rma2info"
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description: Analyses an RMA file and exports information in text format
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keywords:
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- megan
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- rma6
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- classification
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- conversion
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tools:
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- "megan":
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description: "A tool for studying the taxonomic content of a set of DNA reads"
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homepage: "https://uni-tuebingen.de/fakultaeten/mathematisch-naturwissenschaftliche-fakultaet/fachbereiche/informatik/lehrstuehle/algorithms-in-bioinformatics/software/megan6/"
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documentation: "https://software-ab.informatik.uni-tuebingen.de/download/megan6/welcome.html"
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tool_dev_url: "https://github.com/husonlab/megan-ce"
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doi: "10.1371/journal.pcbi.1004957"
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licence: "['GPL >=3']"
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input:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- rma6:
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type: file
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description: RMA6 file from MEGAN or MALT
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pattern: "*.rma6"
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- megan_summary:
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type: boolean
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description: Specify whether to generate an MEGAN summary file
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output:
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- meta:
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type: map
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description: |
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Groovy Map containing sample information
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e.g. [ id:'test', single_end:false ]
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- versions:
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type: file
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description: File containing software versions
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pattern: "versions.yml"
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- txt:
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type: file
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description: Compressed text file
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pattern: "*.txt.gz"
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- megan_summary:
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type: file
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description: Optionally generated MEGAN summary file
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pattern: "*.megan"
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authors:
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- "@jfy133"
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