nf-core_modules/tests/software/ivar/consensus/main.nf
Anders Goncalves da Silva ffa9cf85b1
Clean up header params
I used these for testing and forgot to remove them

Co-authored-by: Harshil Patel <drpatelh@users.noreply.github.com>
2021-02-10 12:03:50 -08:00

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#!/usr/bin/env nextflow
nextflow.enable.dsl = 2
include { IVAR_CONSENSUS } from '../../../../software/ivar/consensus/main.nf' addParams([:])
workflow test_ivar_consensus {
bam = file("${launchDir}/tests/data/bam/test-sc2-artic-v3.bam", checkIfExists: true)
def input = []
input = [ [ id:'test'],
file("${launchDir}/tests/data/bam/test-sc2-artic-v3-sorted-trimmed.bam", checkIfExists: true) ]
IVAR_CONSENSUS ( input )
}