From 54dc67b0d302fedb6f6e64fef1f3e9eb58652491 Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Tue, 25 Jan 2022 10:14:59 -0600
Subject: [PATCH] Add error catching for YAML parsing

Signed-off-by: Thomas A. Christensen II <25492070+MillironX@users.noreply.github.com>
---
 nfdocs-parser.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/nfdocs-parser.py b/nfdocs-parser.py
index b7e2ffe..ba38c51 100755
--- a/nfdocs-parser.py
+++ b/nfdocs-parser.py
@@ -161,7 +161,11 @@ class NFDocs(Directive):
                             doc_yaml = ""
                             for i in pos:
                                 doc_yaml = doc_yaml + nextflow_lines[i].replace(self.DOC_STARTER, "")
-                            docstrings[proc_type][proc_name] = yaml.safe_load(doc_yaml)
+                            try:
+                                docstrings[proc_type][proc_name] = yaml.safe_load(doc_yaml)
+                            except:
+                                logger = logging.getLogger(__name__)
+                                logger.warning(f"Could not parse YAML for {proc_name}")
 
         # Try to convert each definition to a node
         for block_type, block_docs in docstrings.items():
@@ -206,5 +210,5 @@ class NFDocs(Directive):
 def setup(app):
     app.add_directive('nfdocs', NFDocs)
     return {
-        "version": "0.1.1"
+        "version": "0.1.2"
     }