# Tag: Pipeline

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### YAVSAP: versatile viral quasispecies analysis for veterinary samples

05 Mar 2024
Thomas A. Christensen II
Steven Stancic
Andrea Lu
Dana Mitzel
William Wilson
Rachel Palinski

Viral populations within an infected host are composed of viral particles with a spectrum of genetic mutations rather than a unified genome. This phenomenon is referred to as viral “quasispecies,” and has been useful for the understanding of viral transmission and early detection of new viral variants. Next generation sequencing (NGS) has enabled the study of these quasispecies for many viral species, notably Influenza A and B, Human Immunodeficiency Virus (HIV), Foot and Mouth …

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