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    <title>Tanja Normark on MillironX</title>
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      <title>nf-core/taxprofiler: highly parallelised and flexible pipeline for metagenomic taxonomic classification and profiling</title>
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      <pubDate>Mon, 23 Oct 2023 00:00:00 +0000</pubDate>
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      <description>&lt;p&gt;Metagenomic classification tackles the problem of characterising the taxonomic&#xA;source of all DNA sequencing reads in a sample. A common approach to address the&#xA;differences and biases between the many different taxonomic classification tools&#xA;is to run metagenomic data through multiple classification tools and databases.&#xA;This, however, is a very time-consuming task when performed manually -&#xA;particularly when combined with the appropriate preprocessing of sequencing&#xA;reads before the classification. Here we present nf-core/taxprofiler, a highly&#xA;parallelised read-processing and taxonomic classification pipeline. It is&#xA;designed for the automated and simultaneous classification and/or profiling of&#xA;both short- and long-read metagenomic sequencing libraries against a 11&#xA;taxonomic classifiers and profilers as well as databases within a single&#xA;pipeline run. Implemented in Nextflow and as part of the nf-core initiative, the&#xA;pipeline benefits from high levels of scalability and portability, accommodating&#xA;from small to extremely large projects on a wide range of computing&#xA;infrastructure. It has been developed following best-practise software&#xA;development practises and community support to ensure longevity and adaptability&#xA;of the pipeline, to help keep it up to date with the field of metagenomics.&lt;/p&gt;</description>
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