Mahwash Jamy
23 Oct 2023
Sofia Stamouli
Moritz E. Beber
Tanja Normark
Thomas A. Christensen II
Lili Andersson-Li
Maxime Borry
Mahwash Jamy
nf-core community
James A. Fellows YateMetagenomic classification tackles the problem of characterising the taxonomic source of all DNA sequencing reads in a sample. A common approach to address the differences and biases between the many different taxonomic classification tools is to run metagenomic data through multiple classification tools and databases. This, however, is a very time-consuming task when performed manually - particularly when combined with the appropriate preprocessing of sequencing reads before the classification. Here we present nf-core/taxprofiler, a highly parallelised read-processing and taxonomic classification pipeline. Read more »