2021-03-17 23:54:38 -04:00
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#!/bin/bash
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# Untars the ClearLabs bulk download and converts it to a single FASTA suitable
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# for online sequence analyzers
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# Pull in the tarball name
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FASTAFILE=${1}
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# Determine what the nasty name is
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FASTANAME=$(basename -s .fastas.tar "$FASTAFILE")
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# Make a new folder to put everything in
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mkdir "$FASTANAME"
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# Untar the tarball
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2021-03-19 11:44:42 -04:00
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tar -xf "$FASTAFILE" -C "$FASTANAME" --force-local
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2021-03-17 23:54:38 -04:00
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# Smash all of the FASTAs together into a single file
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cat "$FASTANAME"/*.fasta > "$FASTANAME"/"$FASTANAME".fasta
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