2021-03-18 03:54:38 +00:00
|
|
|
#!/bin/bash
|
|
|
|
|
# Untars the ClearLabs bulk download and converts it to a single FASTA suitable
|
|
|
|
|
# for online sequence analyzers
|
|
|
|
|
|
|
|
|
|
# Pull in the tarball name
|
|
|
|
|
FASTAFILE=${1}
|
|
|
|
|
|
|
|
|
|
# Determine what the nasty name is
|
|
|
|
|
FASTANAME=$(basename -s .fastas.tar "$FASTAFILE")
|
|
|
|
|
|
|
|
|
|
# Make a new folder to put everything in
|
|
|
|
|
mkdir "$FASTANAME"
|
|
|
|
|
|
|
|
|
|
# Untar the tarball
|
2021-03-19 15:44:42 +00:00
|
|
|
tar -xf "$FASTAFILE" -C "$FASTANAME" --force-local
|
2021-03-18 03:54:38 +00:00
|
|
|
|
|
|
|
|
# Smash all of the FASTAs together into a single file
|
|
|
|
|
cat "$FASTANAME"/*.fasta > "$FASTANAME"/"$FASTANAME".fasta
|
