From 2340aa974b7cee1e0943805bfa52191dd33653ff Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Tue, 20 Apr 2021 14:34:26 -0600
Subject: [PATCH] Force overwrite of destination fastq.gz

---
 ont/ont-transfer | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/ont/ont-transfer b/ont/ont-transfer
index ad2d11f..7d20f67 100755
--- a/ont/ont-transfer
+++ b/ont/ont-transfer
@@ -89,7 +89,7 @@ for FASTA in ${KEEPERS[@]}; do
     find $FOLDERPATH -name "*.fastq" -path "*_pass*barcode$FASTA*" -print0 | xargs -0 -r -L1 -P0 gzip
 
     # Zip up the copied fastq
-    gzip $FASTQRESULT
+    gzip -f $FASTQRESULT
   else
     echo "No suitable files found for Barcode $FASTA, skipping"
   fi