diff --git a/limsdatapull/README.md b/limsdatapull/README.md new file mode 100644 index 0000000..8553843 --- /dev/null +++ b/limsdatapull/README.md @@ -0,0 +1,22 @@ +# StarLIMS Data Pull + +Pulls positive SC2 sample IDs and relavant dates from StarLIMS. + +**NOTE:** These scripts are encrypted, but are generally intended for use on Windows machines. Decrypt them on a Linux/Mac machine using the [entire repo instructions](https://github.com/MillironX/wphl-bioinformatics/blob/master/README.md), then copy over using a secure flash drive or similar method. + +## Usage + +Double-click `refresh-lims-data.bat` in any location. + +## Installation + +This script requires [Miniconda](https://conda.io/en/master/miniconda.html#windows-installers). + +1. Download and install Miniconda + 1. Select "Just Me" when asked who to install for + 2. All other default options will work +2. Press `Win+R`, type `%USERPROFILE%` and press Enter +3. Create a new folder called `limsdatapull` +4. Copy all of the decrypted files from this folder to `limsdatapull` +5. Open Anaconda console (either one) from the Start Menu +6.