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Cleanup Clearlabs README

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This commit is contained in:
Thomas A. Christensen II 2021-04-13 13:54:07 -06:00
parent 8bc8362a62
commit 4cbe3aa529
Signed by: millironx
GPG key ID: 139C07724802BC5D
2 changed files with 15 additions and 11 deletions
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2
.vscode/settings.json vendored
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@ -4,6 +4,8 @@
"chmod",
"cygpath",
"demux",
"fasta",
"fastas",
"miseq",
"mkdir",
"wphl"

24
clearlabs/README.md
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@ -1,13 +1,14 @@
# ClearLabs
This script converts the FASTA tarball that is downloaded through the ClearLabs web portal into individual and a collective FASTA file using Cygwin.
This script converts the FASTA tarball that is downloaded through the ClearLabs
web portal into individual and a collective FASTA file using Cygwin.
## Usage
To be run in Cygwin
```bash
$ convert-fastas.sh TARBALL
convert-fastas.sh TARBALL
```
## Installation
@ -20,11 +21,11 @@ This script requires [Cygwin](https://cygwin.com/install.html).
3. All other default options will work
2. Open the Cygwin console and use the following commands
```bash
$ git clone https://github.com/MillironX/wphl-bioinformatics.git
$ cp wphl-bioinformatics/clearlabs/convert-fastas.sh ~
$ chmod +x convert-fastas.sh
```
```bash
git clone https://github.com/MillironX/wphl-bioinformatics.git
cp wphl-bioinformatics/clearlabs/convert-fastas.sh ~
chmod +x convert-fastas.sh
```
3. Press the Win+R on the keyboard
4. Type `shell:sendto` and press Enter
@ -32,9 +33,10 @@ $ chmod +x convert-fastas.sh
6. Type `C:\cygwin64\bin\bash.exe` and click Next
7. Type `Convert FASTA Tarball` or something else memorable and click Finish
8. Right-click the newly created shortcut and click Properties
9. In the Target textbox, add ` --login convert-fastas.sh` (including the space) to the existing text
9. In the Target textbox, add a space and `--login convert-fastas.sh` to the
existing text
10. Click OK
An item will now be added to the Right click | Send to menu for FASTA tarballs. Once clicked, the extracted tarballs can be found in `C:\cygwin64\home\<USERNAME>`.
An item will now be added to the Right click | Send to menu for FASTA tarballs.
Once clicked, the extracted tarballs can be found in
`C:\cygwin64\home\<USERNAME>`.