From 54b8fddca8cd98aa00f6361efc0016e04fc1b227 Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Tue, 13 Apr 2021 13:17:45 -0600
Subject: [PATCH] Cleanup ONT README

---
 .vscode/settings.json | 3 +++
 ont/README.md         | 6 +++---
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/.vscode/settings.json b/.vscode/settings.json
index 840f89a..5e5f816 100644
--- a/.vscode/settings.json
+++ b/.vscode/settings.json
@@ -1,7 +1,10 @@
 {
     "cSpell.words": [
+        "Nanopore",
         "chmod",
         "cygpath",
+        "demux",
+        "mkdir",
         "wphl"
     ]
 }
\ No newline at end of file
diff --git a/ont/README.md b/ont/README.md
index c957227..862ee74 100644
--- a/ont/README.md
+++ b/ont/README.md
@@ -8,7 +8,7 @@ Note that at the time of writing, the GridION runs Ubuntu 16.04 LTS, and mounts
 ### `ont-demux`
 
 ```bash
-$ ont-demux FAP_FOLDER
+ont-demux FAP_FOLDER
 ```
 
 Consolidates all FAST5s into a single gzipped FASTQ using ONT's `guppy_barcoder`. Note that this is for MinKNOW's default settings of 4000 reads/file. It is _highly_ recommended to set the "Number of Reads per File" entry in MinKNOW to 0, and checking "Compress FASTQs" to produce nearly the same results.
@@ -16,7 +16,7 @@ Consolidates all FAST5s into a single gzipped FASTQ using ONT's `guppy_barcoder`
 ### `ont-transfer`
 
 ```bash
-$ ont-transfer [-s 1|6|12] FAP_FOLDER
+ont-transfer [-s 1|6|12] FAP_FOLDER
 ```
 
 Transfers all of the passing FAST5 and FASTQ files to the first available USB drive, skipping empty barcodes based on the number of the first skip passed through the `-s` parameter, consolidating all files of the same type into one folder for easier sorting and uploading.
@@ -32,7 +32,7 @@ Transfers all of the passing FAST5 and FASTQ files to the first available USB dr
 See ONT for guppy installation instructions. Others may be installed by opening a terminal and running
 
 ```bash
-$ sudo apt-get install git parallel -y
+sudo apt-get install git parallel -y
 ```
 
 ### Instructions