diff --git a/limsdatapull/README.md b/limsdatapull/README.md index 8553843..986ca40 100644 --- a/limsdatapull/README.md +++ b/limsdatapull/README.md @@ -17,6 +17,12 @@ This script requires [Miniconda](https://conda.io/en/master/miniconda.html#windo 2. All other default options will work 2. Press `Win+R`, type `%USERPROFILE%` and press Enter 3. Create a new folder called `limsdatapull` -4. Copy all of the decrypted files from this folder to `limsdatapull` -5. Open Anaconda console (either one) from the Start Menu -6. +4. Copy all of the decrypted files to `limsdatapull` +5. Open Anaconda console (not PowerShell) from the Start Menu +6. Run `conda create -n limsdatapull -f %USERPROFILE%\limsdatapull\limsdatapull.yaml` +7. Answer `y` to all the prompts +8. Close the console +9. (Optional) Copy `refresh-lims-data.bat` to the Desktop +10. (Optional) Set up a scheduled task to run `refresh-lims-data.bat` regularly + +When `refresh-lims-data.bat` is run, a new file called `SeqenceDatabase.xlsx` will be added to `limsdatapull`. This file can be referenced by other spreadsheets for efficient and timely lookup data from StarLIMS.