From 7065e22ab30c6cfaa96481c685b3272d452f4cb7 Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Wed, 17 Mar 2021 21:54:38 -0600
Subject: [PATCH] Convert a ClearLabs fasta tarball on Linux

---
 convert-fastas.sh | 18 ++++++++++++++++++
 1 file changed, 18 insertions(+)
 create mode 100755 convert-fastas.sh

diff --git a/convert-fastas.sh b/convert-fastas.sh
new file mode 100755
index 0000000..2cea868
--- /dev/null
+++ b/convert-fastas.sh
@@ -0,0 +1,18 @@
+#!/bin/bash
+# Untars the ClearLabs bulk download and converts it to a single FASTA suitable
+# for online sequence analyzers
+
+# Pull in the tarball name
+FASTAFILE=${1}
+
+# Determine what the nasty name is
+FASTANAME=$(basename -s .fastas.tar "$FASTAFILE")
+
+# Make a new folder to put everything in
+mkdir "$FASTANAME"
+
+# Untar the tarball
+tar -xf "$FASTAFILE" -C "$FASTANAME"
+
+# Smash all of the FASTAs together into a single file
+cat "$FASTANAME"/*.fasta > "$FASTANAME"/"$FASTANAME".fasta