diff --git a/clearlabs/README.md b/clearlabs/README.md new file mode 100644 index 0000000..012bb43 --- /dev/null +++ b/clearlabs/README.md @@ -0,0 +1,32 @@ +# ClearLabs + +This script converts the FASTA tarball that is downloaded through the ClearLabs web portal into individual and a collective FASTA file using Cygwin. + +## Usage + +To be run in Cygwin + +```bash +$ convert-fastas.sh TARBALL +``` + +## Installation + +This script requires [Cygwin](https://cygwin.com/install.html). + +1. Download and install Cygwin + 1. Select "Just Me" when asked who to install for + 2. Find and add the latest version of the "git" package when prompted + 3. All other default options will work +2. Open the Cygwin console and use the following commands + +```bash +$ git clone https://github.com/MillironX/wphl-bioinformatics.git +$ cp wphl-bioinformatics/clearlabs/convert-fastas.sh ~ +$ chmod +x convert-fastas.sh +``` + +3. Press the Win+R on the keyboard +4. Type `shell:sendto` and press Enter +5. Right-click in the newly opened window, and click "New Shortcut" +