diff --git a/README.md b/README.md index 9a984f2..6ae427f 100644 --- a/README.md +++ b/README.md @@ -2,24 +2,29 @@ Bioinformatics scripts for use at the Wyoming Public Health Laboratory. -These scripts have various purposes, uses, and instructions. The only unifying thing about them is that they were all written for WPHL. Please check the `README` file in each directory for more detailed instructions. +These scripts have various purposes, uses, and instructions. The only unifying +thing about them is that they were all written for WPHL. Please check the +`README` file in each directory for more detailed instructions. ## Encryption -**NOTICE:** Some files in this repository are encrypted using [git-crypt](https://github.com/AGWA/git-crypt). git-crypt works on a repository-wide basis, meaning that decryption must occur on the entire repository. +**NOTICE:** Some files in this repository are encrypted using +[git-crypt](https://github.com/AGWA/git-crypt). git-crypt works on a +repository-wide basis, meaning that decryption must occur on the entire +repository. ### Installing git-crypt #### Ubuntu, Debian, etc. ```bash -$ sudo apt-get install git-crypt -y +sudo apt-get install git-crypt -y ``` #### Fedora, CentOS, RHEL, etc. ```bash -$ sudo yum install git-crypt -y +sudo yum install git-crypt -y ``` #### MacOS @@ -27,22 +32,29 @@ $ sudo yum install git-crypt -y Install [Homebrew](https://brew.sh/) first. Then ```bash -$ brew install git-crypt +brew install git-crypt ``` #### Windows -There are no official git-crypt builds for Windows. I repeat, **git-crypt does not exist for Windows** regardless of what others may tell you. If possible, you may use the [Windows Subsystem for Linux](https://docs.microsoft.com/en-us/windows/wsl/install-win10), but you cannot use native git-crypt. +There are no official git-crypt builds for Windows. I repeat, **git-crypt does +not exist for Windows** regardless of what others may tell you. If possible, you +may use the [Windows Subsystem for +Linux](https://docs.microsoft.com/en-us/windows/wsl/install-win10), but you +cannot use native git-crypt. ### Decrypting the repository -Encryption is GPG-based. If your GPG key has been added to the repository (you know if you have access), then run +Encryption is GPG-based. If your GPG key has been added to the repository (you +know if you have access), then run ```bash -$ git clone https://github.com/MillironX/wphl-bioinformatics.git && cd wphl-bioinformatics -$ git-crypt unlock +git clone https://github.com/MillironX/wphl-bioinformatics.git && cd wphl-bioinformatics +git-crypt unlock ``` The files will now be decrypted and can be usable. -If you need to copy your GPG keys to a new machine to be able to decrypt the files, follow the instructions at https://www.phildev.net/pgp/gpg_moving_keys.html under "Copy Just Your Keys." +If you need to copy your GPG keys to a new machine to be able to decrypt the +files, follow the instructions at +https://www.phildev.net/pgp/gpg_moving_keys.html under "Copy Just Your Keys."