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Make fasta tarball conversion work on Cygwin

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Thomas A. Christensen II 2021-03-19 09:44:42 -06:00 committed by GitHub
parent 7065e22ab3
commit 9f940778e4
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convert-fastas.sh
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@ -12,7 +12,7 @@ FASTANAME=$(basename -s .fastas.tar "$FASTAFILE")
mkdir "$FASTANAME" mkdir "$FASTANAME"
# Untar the tarball # Untar the tarball
tar -xf "$FASTAFILE" -C "$FASTANAME" tar -xf "$FASTAFILE" -C "$FASTANAME" --force-local
# Smash all of the FASTAs together into a single file # Smash all of the FASTAs together into a single file
cat "$FASTANAME"/*.fasta > "$FASTANAME"/"$FASTANAME".fasta cat "$FASTANAME"/*.fasta > "$FASTANAME"/"$FASTANAME".fasta