millironx/sc2-sequencing
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File manipulation/bioinformatics-type scripts that my colleagues have found useful in sequencing SARS-CoV2 (SC2).
18 commits 1 branch 0 tags 101 KiB
Julia 37.6%
Shell 34.6%
Python 23.7%
Batchfile 4.1%
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Thomas A. Christensen II 25625085d3
Add auto-updating sample database
2021-03-26 14:25:22 -06:00
.git-crypt Add 1 git-crypt collaborator 2021-03-26 14:17:05 -06:00
clearlabs Reorganize folder structure 2021-03-23 11:20:19 -06:00
illumina Add Illumina Basespace FASTQ downloader script 2021-03-26 14:04:50 -06:00
limsdatapull Add auto-updating sample database 2021-03-26 14:25:22 -06:00
ont Add ONT consolidation script 2021-03-26 14:08:34 -06:00
.gitattributes Add auto-updating sample database 2021-03-26 14:25:22 -06:00
.gitignore Add USB drive transfer script for ONT GridION 2021-03-23 11:20:58 -06:00
LICENSE Initial commit 2021-03-17 21:51:44 -06:00
README.md Initial commit 2021-03-17 21:51:44 -06:00

README.md

wphl-bioinformatics

Bioinformatics scripts for use at the Wyoming Public Health Laboratory