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sc2-sequencing/limsdatapull
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Thomas A. Christensen II 4b6b243257
Create README.md
2021-04-01 10:12:14 -06:00
..
limsdatapull.yaml Add auto-updating sample database 2021-03-26 14:25:22 -06:00
README.md Create README.md 2021-04-01 10:12:14 -06:00
refresh-lims-data.bat Add auto-updating sample database 2021-03-26 14:25:22 -06:00
updatedata.py Add auto-updating sample database 2021-03-26 14:25:22 -06:00

README.md

StarLIMS Data Pull

Pulls positive SC2 sample IDs and relavant dates from StarLIMS.

NOTE: These scripts are encrypted, but are generally intended for use on Windows machines. Decrypt them on a Linux/Mac machine using the entire repo instructions, then copy over using a secure flash drive or similar method.

Usage

Double-click refresh-lims-data.bat in any location.

Installation

This script requires Miniconda.

  1. Download and install Miniconda
    1. Select "Just Me" when asked who to install for
    2. All other default options will work
  2. Press Win+R, type %USERPROFILE% and press Enter
  3. Create a new folder called limsdatapull
  4. Copy all of the decrypted files from this folder to limsdatapull
  5. Open Anaconda console (either one) from the Start Menu