style: Use double-quotes

Co-authored-by: ewels <ewels@users.noreply.github.com>
pull/10/head
Edmund Miller 1 year ago committed by Thomas A. Christensen II
parent 05aef69bc1
commit 0aeab8d284

@ -17,13 +17,13 @@ jobs:
fail-fast: false
matrix:
nextflow_version:
- '21.10.3'
- '22.04'
- '22.03.1-edge'
- 'latest'
- 'latest-stable'
- 'latest-edge'
- 'latest-everything'
- "21.10.3"
- "22.04"
- "22.03.1-edge"
- "latest"
- "latest-stable"
- "latest-edge"
- "latest-everything"
all_distribution:
- true
- false
@ -33,7 +33,7 @@ jobs:
- uses: actions/setup-node@v3
with:
node-version: 16
cache: 'npm'
cache: "npm"
- run: npm ci
- run: npm run build
- run: npm run package

@ -12,7 +12,7 @@ jobs:
- uses: actions/setup-node@v3
with:
node-version: 16
cache: 'npm'
cache: "npm"
- run: npm ci
- run: npm run build
- run: npm run package

@ -17,7 +17,7 @@ jobs:
- uses: actions/setup-node@v3
with:
node-version: 16
cache: 'npm'
cache: "npm"
- run: npm ci
- run: npm run build
- run: npm run format:check

@ -3,7 +3,7 @@
"tabWidth": 2,
"useTabs": false,
"semi": false,
"singleQuote": true,
"singleQuote": false,
"trailingComma": "none",
"bracketSpacing": true,
"arrowParens": "avoid"

@ -1,22 +1,22 @@
name: 'Setup Nextflow'
description: 'Install Nextflow and add it to the PATH'
author: 'nf-core'
name: "Setup Nextflow"
description: "Install Nextflow and add it to the PATH"
author: "nf-core"
inputs:
version:
description: 'The Nextflow version to download (if necessary) and use. Example: 21.10.3'
description: "The Nextflow version to download (if necessary) and use. Example: 21.10.3"
required: false
default: 'latest-stable'
default: "latest-stable"
all:
description: "Whether to install every Nextflow release via the '-all' distribution."
required: false
default: false
token:
description: 'GitHub token to access the GitHub Releases API. The default token should be sufficient for all use cases.'
description: "GitHub token to access the GitHub Releases API. The default token should be sufficient for all use cases."
required: false
default: ${{ github.token }}
runs:
using: 'node16'
main: 'dist/index.js'
using: "node16"
main: "dist/index.js"
branding:
icon: 'shuffle'
color: 'green'
icon: "shuffle"
color: "green"

@ -1,11 +1,11 @@
import * as core from '@actions/core'
import { GitHub } from '@actions/github/lib/utils'
import * as tc from '@actions/tool-cache'
import retry from 'async-retry'
import * as fs from 'fs'
import semver from 'semver'
import * as core from "@actions/core"
import { GitHub } from "@actions/github/lib/utils"
import * as tc from "@actions/tool-cache"
import retry from "async-retry"
import * as fs from "fs"
import semver from "semver"
const NEXTFLOW_REPO = { owner: 'nextflow-io', repo: 'nextflow' }
const NEXTFLOW_REPO = { owner: "nextflow-io", repo: "nextflow" }
// HACK Private but I want to test this
export async function all_nf_releases(
@ -35,21 +35,21 @@ export async function release_data(
): Promise<object> {
// Setup tag-based filtering
let filter = (r: object): boolean => {
return semver.satisfies(r['tag_name'], version, true)
return semver.satisfies(r["tag_name"], version, true)
}
// Check if the user passed a 'latest*' tag, and override filtering
// accordingly
if (version.includes('latest')) {
if (version.includes('-everything')) {
if (version.includes("latest")) {
if (version.includes("-everything")) {
// No filtering
// eslint-disable-next-line @typescript-eslint/no-unused-vars
filter = (r: object) => {
return true
}
} else if (version.includes('-edge')) {
} else if (version.includes("-edge")) {
filter = r => {
return r['tag_name'].endsWith('-edge')
return r["tag_name"].endsWith("-edge")
}
} else {
// This is special: passing 'latest' or 'latest-stable' allows us to use
@ -66,19 +66,19 @@ export async function release_data(
matching_releases.sort((x, y) => {
// HACK IDK why the value flip is necessary with the return
return semver.compare(x['tag_name'], y['tag_name'], true) * -1
return semver.compare(x["tag_name"], y["tag_name"], true) * -1
})
return matching_releases[0]
}
export function nextflow_bin_url(release: object, get_all: boolean): string {
const release_assets = release['assets']
const release_assets = release["assets"]
const all_asset = release_assets.filter((a: object) => {
return a['browser_download_url'].endsWith('-all')
return a["browser_download_url"].endsWith("-all")
})[0]
const regular_asset = release_assets.filter((a: object) => {
return a['name'] === 'nextflow'
return a["name"] === "nextflow"
})[0]
const dl_asset = get_all ? all_asset : regular_asset
@ -107,7 +107,7 @@ export async function install_nextflow(
const nf_path = `${temp_install_dir}/nextflow`
fs.renameSync(nf_dl_path, nf_path)
fs.chmodSync(nf_path, '0711')
fs.chmodSync(nf_path, "0711")
return temp_install_dir
}

@ -1,22 +1,22 @@
import * as core from '@actions/core'
import * as exec from '@actions/exec'
import * as github from '@actions/github'
import { GitHub } from '@actions/github/lib/utils'
import * as tc from '@actions/tool-cache'
import * as fs from 'fs'
import * as core from "@actions/core"
import * as exec from "@actions/exec"
import * as github from "@actions/github"
import { GitHub } from "@actions/github/lib/utils"
import * as tc from "@actions/tool-cache"
import * as fs from "fs"
import { install_nextflow, nextflow_bin_url, release_data } from './functions'
import { install_nextflow, nextflow_bin_url, release_data } from "./functions"
async function run(): Promise<void> {
// Set environment variables
core.exportVariable('CAPSULE_LOG', 'none')
core.exportVariable("CAPSULE_LOG", "none")
// Read in the arguments
const token = core.getInput('token')
const version = core.getInput('version')
const get_all = core.getBooleanInput('all')
const token = core.getInput("token")
const version = core.getInput("version")
const get_all = core.getBooleanInput("all")
let resolved_version = ''
let resolved_version = ""
// Setup the API
let octokit: InstanceType<typeof GitHub> | undefined
@ -36,9 +36,9 @@ async function run(): Promise<void> {
if (octokit !== undefined) {
release = await release_data(version, octokit)
}
resolved_version = release['tag_name']
resolved_version = release["tag_name"]
core.info(
`Input version '${version}' resolved to Nextflow ${release['name']}`
`Input version '${version}' resolved to Nextflow ${release["name"]}`
)
} catch (e: unknown) {
if (e instanceof Error) {
@ -49,7 +49,7 @@ async function run(): Promise<void> {
}
// Get the download url for the desired release
let url = ''
let url = ""
try {
url = nextflow_bin_url(release, get_all)
core.info(`Preparing to download from ${url}`)
@ -60,14 +60,14 @@ async function run(): Promise<void> {
}
try {
// Download Nextflow and add it to path
let nf_path = ''
nf_path = tc.find('nextflow', resolved_version)
let nf_path = ""
nf_path = tc.find("nextflow", resolved_version)
if (!nf_path) {
core.debug(`Could not find Nextflow ${resolved_version} in cache`)
const nf_install_path = await install_nextflow(url, resolved_version)
nf_path = await tc.cacheDir(nf_install_path, 'nextflow', resolved_version)
nf_path = await tc.cacheDir(nf_install_path, "nextflow", resolved_version)
core.debug(`Added Nextflow to cache: ${nf_path}`)
fs.rmdirSync(nf_install_path, { recursive: true })
@ -86,11 +86,11 @@ async function run(): Promise<void> {
// Run Nextflow so it downloads its dependencies
try {
await exec.exec('nextflow', ['help'])
await exec.exec("nextflow", ["help"])
} catch (e: unknown) {
if (e instanceof Error) {
core.warning(
'Nextflow appears to have installed correctly, but an error was thrown while running it.'
"Nextflow appears to have installed correctly, but an error was thrown while running it."
)
}
}

@ -1,9 +1,9 @@
import * as github from '@actions/github'
import { GitHub } from '@actions/github/lib/utils'
import anyTest, { TestFn } from 'ava' // eslint-disable-line import/no-unresolved
import * as github from "@actions/github"
import { GitHub } from "@actions/github/lib/utils"
import anyTest, { TestFn } from "ava" // eslint-disable-line import/no-unresolved
import * as functions from '../src/functions'
import { getToken } from './utils'
import * as functions from "../src/functions"
import { getToken } from "./utils"
const test = anyTest as TestFn<{
token: string
@ -19,18 +19,18 @@ test.before(t => {
}
})
test('all_nf_releases', async t => {
const result = await functions.all_nf_releases(t.context['octokit'])
t.is(typeof result, 'object')
test("all_nf_releases", async t => {
const result = await functions.all_nf_releases(t.context["octokit"])
t.is(typeof result, "object")
})
test('lastest_stable_release_data', async t => {
test("lastest_stable_release_data", async t => {
const result = await functions.latest_stable_release_data(
t.context['octokit']
t.context["octokit"]
)
t.is(typeof result, 'object')
t.is(result['tag_name'], 'v22.10.2')
t.is(typeof result, "object")
t.is(result["tag_name"], "v22.10.2")
})
test.todo('nextflow_bin_url')
test.todo('install_nextflow')
test.todo("nextflow_bin_url")
test.todo("install_nextflow")

@ -1,13 +1,13 @@
import test from 'ava' // eslint-disable-line import/no-unresolved
import * as cp from 'child_process'
import * as path from 'path'
import * as process from 'process'
import test from "ava" // eslint-disable-line import/no-unresolved
import * as cp from "child_process"
import * as path from "path"
import * as process from "process"
// eslint-disable-next-line ava/no-skip-test
test.skip('test runs', t => {
process.env['INPUT_VERSION'] = 'v22.10.2'
test.skip("test runs", t => {
process.env["INPUT_VERSION"] = "v22.10.2"
const np = process.execPath
const ip = path.join(__dirname, '..', 'lib', 'src', 'main.js')
const ip = path.join(__dirname, "..", "lib", "src", "main.js")
const options: cp.ExecFileSyncOptions = {
env: process.env
}

@ -1,9 +1,9 @@
import * as github from '@actions/github'
import { GitHub } from '@actions/github/lib/utils'
import anyTest, { TestFn } from 'ava' // eslint-disable-line import/no-unresolved
import * as github from "@actions/github"
import { GitHub } from "@actions/github/lib/utils"
import anyTest, { TestFn } from "ava" // eslint-disable-line import/no-unresolved
import { release_data } from '../src/functions'
import { getToken } from './utils'
import { release_data } from "../src/functions"
import { getToken } from "./utils"
const test = anyTest as TestFn<{
token: string
@ -20,11 +20,11 @@ test.before(t => {
})
const macro = test.macro(async (t, version: string, expected: string) => {
const result = await release_data(version, t.context['octokit'])
t.is(result['tag_name'], expected)
const result = await release_data(version, t.context["octokit"])
t.is(result["tag_name"], expected)
})
test('hard version', macro, 'v22.10.2', 'v22.10.2')
test('latest-stable', macro, 'latest-stable', 'v22.10.2')
test('latest-edge', macro, 'latest-edge', 'v22.09.7-edge')
test('latest-everything', macro, 'latest-everything', 'v22.10.2')
test("hard version", macro, "v22.10.2", "v22.10.2")
test("latest-stable", macro, "latest-stable", "v22.10.2")
test("latest-edge", macro, "latest-edge", "v22.09.7-edge")
test("latest-everything", macro, "latest-everything", "v22.10.2")

@ -1,9 +1,9 @@
export function getToken(first: boolean): string {
const token = process.env['GITHUB_TOKEN'] || ''
const token = process.env["GITHUB_TOKEN"] || ""
if (!token && first) {
/* eslint-disable-next-line no-console */
console.warn(
'Skipping GitHub tests. Set $GITHUB_TOKEN to run REST client and GraphQL client tests'
"Skipping GitHub tests. Set $GITHUB_TOKEN to run REST client and GraphQL client tests"
)
first = false
}

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