style: Run prettier

This commit is contained in:
Edmund Miller 2022-11-12 22:07:59 -06:00 committed by Thomas A. Christensen II
parent 9ec3bc304f
commit 147da60f8f
3 changed files with 104 additions and 108 deletions

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@ -1,22 +1,22 @@
name: "Setup Nextflow"
description: "Install Nextflow and add it to the PATH"
author: "nf-core"
name: 'Setup Nextflow'
description: 'Install Nextflow and add it to the PATH'
author: 'nf-core'
inputs:
version:
description: "The Nextflow version to download (if necessary) and use. Example: 21.10.3"
description: 'The Nextflow version to download (if necessary) and use. Example: 21.10.3'
required: false
default: "latest-stable"
default: 'latest-stable'
all:
description: "Whether to install every Nextflow release via the '-all' distribution."
required: false
default: false
token:
description: "GitHub token to access the GitHub Releases API. The default token should be sufficient for all use cases."
description: 'GitHub token to access the GitHub Releases API. The default token should be sufficient for all use cases.'
required: false
default: ${{ github.token }}
runs:
using: "node16"
main: "dist/index.js"
using: 'node16'
main: 'dist/index.js'
branding:
icon: "shuffle"
color: "green"
icon: 'shuffle'
color: 'green'

176
index.ts
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@ -1,180 +1,176 @@
import * as core from "@actions/core";
import * as exec from "@actions/exec";
import * as fs from "fs";
import * as github from "@actions/github";
import * as tc from "@actions/tool-cache";
import retry = require("async-retry");
import semver = require("semver");
import * as core from '@actions/core'
import * as exec from '@actions/exec'
import * as fs from 'fs'
import * as github from '@actions/github'
import * as tc from '@actions/tool-cache'
import retry = require('async-retry')
import semver = require('semver')
const NEXTFLOW_REPO = { owner: "nextflow-io", repo: "nextflow" };
const NEXTFLOW_REPO = {owner: 'nextflow-io', repo: 'nextflow'}
async function all_nf_releases(ok) {
return await ok.paginate(
ok.rest.repos.listReleases,
NEXTFLOW_REPO,
(response) => response.data
);
response => response.data
)
}
async function latest_stable_release_data(ok) {
const { data: stable_release } = await ok.rest.repos.getLatestRelease(
const {data: stable_release} = await ok.rest.repos.getLatestRelease(
NEXTFLOW_REPO
);
)
return stable_release;
return stable_release
}
async function release_data(version, ok) {
// Setup tag-based filtering
let filter = (r) => {
return semver.satisfies(r.tag_name, version, true);
};
let filter = r => {
return semver.satisfies(r.tag_name, version, true)
}
// Check if the user passed a 'latest*' tag, and override filtering
// accordingly
if (version.includes("latest")) {
if (version.includes("-everything")) {
if (version.includes('latest')) {
if (version.includes('-everything')) {
// No filtering
filter = (r) => {
return true;
};
} else if (version.includes("-edge")) {
filter = (r) => {
return r.tag_name.endsWith("-edge");
};
filter = r => {
return true
}
} else if (version.includes('-edge')) {
filter = r => {
return r.tag_name.endsWith('-edge')
}
} else {
// This is special: passing 'latest' or 'latest-stable' allows us to use
// the latest stable GitHub release direct from the API
const stable_release = await latest_stable_release_data(ok);
return stable_release;
const stable_release = await latest_stable_release_data(ok)
return stable_release
}
}
// Get all the releases
const all_releases = await all_nf_releases(ok);
const all_releases = await all_nf_releases(ok)
let matching_releases = all_releases.filter(filter);
let matching_releases = all_releases.filter(filter)
matching_releases.sort(function (x, y) {
semver.compare(x.tag_name, y.tag_name, true);
});
semver.compare(x.tag_name, y.tag_name, true)
})
return matching_releases[0];
return matching_releases[0]
}
function nextflow_bin_url(release, get_all) {
const release_assets = release.assets;
const all_asset = release_assets.filter((a) => {
return a.browser_download_url.endsWith("-all");
})[0];
const regular_asset = release_assets.filter((a) => {
return a.name == "nextflow";
})[0];
const release_assets = release.assets
const all_asset = release_assets.filter(a => {
return a.browser_download_url.endsWith('-all')
})[0]
const regular_asset = release_assets.filter(a => {
return a.name == 'nextflow'
})[0]
const dl_asset = get_all ? all_asset : regular_asset;
const dl_asset = get_all ? all_asset : regular_asset
return dl_asset.browser_download_url;
return dl_asset.browser_download_url
}
async function install_nextflow(url, version) {
core.debug(`Downloading Nextflow from ${url}`);
core.debug(`Downloading Nextflow from ${url}`)
const nf_dl_path = await retry(
async (bail) => {
return await tc.downloadTool(url);
async bail => {
return await tc.downloadTool(url)
},
{
onRetry: (err) => {
core.debug(`Download of ${url} failed, trying again. Error ${err}`);
},
onRetry: err => {
core.debug(`Download of ${url} failed, trying again. Error ${err}`)
}
}
);
)
const temp_install_dir = fs.mkdtempSync(`nxf-${version}`);
const nf_path = `${temp_install_dir}/nextflow`;
const temp_install_dir = fs.mkdtempSync(`nxf-${version}`)
const nf_path = `${temp_install_dir}/nextflow`
fs.renameSync(nf_dl_path, nf_path);
fs.chmodSync(nf_path, "0711");
fs.renameSync(nf_dl_path, nf_path)
fs.chmodSync(nf_path, '0711')
return temp_install_dir;
return temp_install_dir
}
async function run() {
// Set environment variables
core.exportVariable("CAPSULE_LOG", "none");
core.exportVariable('CAPSULE_LOG', 'none')
// Read in the arguments
const token = core.getInput("token");
const version = core.getInput("version");
const get_all = core.getBooleanInput("all");
const token = core.getInput('token')
const version = core.getInput('version')
const get_all = core.getBooleanInput('all')
let resolved_version = "";
let resolved_version = ''
// Setup the API
let octokit = {};
let octokit = {}
try {
octokit = github.getOctokit(token);
octokit = github.getOctokit(token)
} catch (e: any) {
core.setFailed(
`Could not authenticate to GitHub Releases API with provided token\n${e.message}`
);
)
}
// Get the release info for the desired release
let release: any = {};
let release: any = {}
try {
release = await release_data(version, octokit);
resolved_version = release.tag_name;
core.info(
`Input version '${version}' resolved to Nextflow ${release.name}`
);
release = await release_data(version, octokit)
resolved_version = release.tag_name
core.info(`Input version '${version}' resolved to Nextflow ${release.name}`)
} catch (e: any) {
core.setFailed(
`Could not retrieve Nextflow release matching ${version}.\n${e.message}`
);
)
}
// Get the download url for the desired release
let url = "";
let url = ''
try {
url = nextflow_bin_url(release, get_all);
core.info(`Preparing to download from ${url}`);
url = nextflow_bin_url(release, get_all)
core.info(`Preparing to download from ${url}`)
} catch (e: any) {
core.setFailed(`Could not parse the download URL\n${e.message}`);
core.setFailed(`Could not parse the download URL\n${e.message}`)
}
try {
// Download Nextflow and add it to path
let nf_path = "";
nf_path = tc.find("nextflow", resolved_version);
let nf_path = ''
nf_path = tc.find('nextflow', resolved_version)
if (!nf_path) {
core.debug(`Could not find Nextflow ${resolved_version} in cache`);
const nf_install_path = await install_nextflow(url, resolved_version);
core.debug(`Could not find Nextflow ${resolved_version} in cache`)
const nf_install_path = await install_nextflow(url, resolved_version)
nf_path = await tc.cacheDir(
nf_install_path,
"nextflow",
resolved_version
);
core.debug(`Added Nextflow to cache: ${nf_path}`);
nf_path = await tc.cacheDir(nf_install_path, 'nextflow', resolved_version)
core.debug(`Added Nextflow to cache: ${nf_path}`)
fs.rmdirSync(nf_install_path, { recursive: true });
fs.rmdirSync(nf_install_path, {recursive: true})
} else {
core.debug(`Using cached version of Nextflow: ${nf_path}`);
core.debug(`Using cached version of Nextflow: ${nf_path}`)
}
core.addPath(nf_path);
core.addPath(nf_path)
core.info(`Downloaded \`nextflow\` to ${nf_path} and added to PATH`);
core.info(`Downloaded \`nextflow\` to ${nf_path} and added to PATH`)
} catch (e: any) {
core.setFailed(e.message);
core.setFailed(e.message)
}
// Run Nextflow so it downloads its dependencies
try {
const nf_exit_code = await exec.exec("nextflow", ["help"])
const nf_exit_code = await exec.exec('nextflow', ['help'])
} catch (e: any) {
core.warning("Nextflow appears to have installed correctly, but an error was thrown while running it.")
core.warning(
'Nextflow appears to have installed correctly, but an error was thrown while running it.'
)
}
}
run();
run()

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{
"extends": "@tsconfig/node16/tsconfig.json",
"compilerOptions": {
"target": "es6",
"module": "commonjs",
"strict": true,
"noImplicitAny": false,
"esModuleInterop": true,
}
"extends": "@tsconfig/node16/tsconfig.json",
"compilerOptions": {
"target": "es6",
"module": "commonjs",
"strict": true,
"noImplicitAny": false,
"esModuleInterop": true
}
}