mirror of
https://github.com/MillironX/setup-nextflow.git
synced 2024-12-22 04:48:18 +00:00
Add documentation files
This commit is contained in:
parent
2a02cc023b
commit
25b680eb4e
2 changed files with 95 additions and 0 deletions
19
CHANGELOG.md
Normal file
19
CHANGELOG.md
Normal file
|
@ -0,0 +1,19 @@
|
|||
# Changelog
|
||||
|
||||
All notable changes to this project will be documented in this file.
|
||||
|
||||
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
|
||||
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
|
||||
|
||||
## [Unreleased]
|
||||
|
||||
## [1.0.0] - 2022-06-13
|
||||
|
||||
### Added
|
||||
|
||||
- NodeJS GitHub Action to download and install Nextflow
|
||||
- GitHub Actions workflow to test Nextflow installation and downstream usage
|
||||
- Documentation and license files
|
||||
|
||||
[unreleased]: https://github.com/MillironX/setup-nextflow/compare/v1.0.0...HEAD
|
||||
[1.0.0]: https://github.com/MillironX/setup-nextflow/releases/tag/v1.0.0
|
76
README.md
Normal file
76
README.md
Normal file
|
@ -0,0 +1,76 @@
|
|||
# Setup Nextflow for GitHub Actions
|
||||
|
||||
[![Testing](https://github.com/MillironX/setup-nextflow/actions/workflows/example.yml/badge.svg)](https://github.com/MillironX/setup-nextflow/actions/workflows/example.yml)
|
||||
[![MIT License](https://img.shields.io/github/license/MillironX/setup-nextflow?logo=opensourceinitiative)](https://github.com/MillironX/setup-nextflow/blob/master/LICENSE)
|
||||
[![GitHub tag (latest by date)](https://img.shields.io/github/v/tag/MillironX/setup-nextflow?logo=github)](https://github.com/MillironX/setup-nextflow/releases/latest)
|
||||
[![Get from GitHub Actions](https://img.shields.io/static/v1?label=actions&message=marketplace&color=green&logo=githubactions)](https://github.com/marketplace/setup-nextflow)
|
||||
|
||||
An action to install [Nextflow](https://nextflow.io) into a GitHub Actions workflow and make it available for subsequent steps.
|
||||
|
||||
## Quick start
|
||||
|
||||
```yaml
|
||||
name: Example workflow
|
||||
on: push
|
||||
jobs:
|
||||
example:
|
||||
runs-on: ubuntu-latest
|
||||
steps:
|
||||
- uses: actions/checkout@v3
|
||||
- uses: actions/setup-java@v3
|
||||
with:
|
||||
distribution: "temurin"
|
||||
java-version: "11"
|
||||
- uses: MillironX/setup-nextflow@v1
|
||||
with:
|
||||
version: "21.10"
|
||||
all: false
|
||||
token: ${{ secrets.GITHUB_TOKEN }}
|
||||
- run: nextflow help
|
||||
```
|
||||
|
||||
## Inputs
|
||||
|
||||
### `version`
|
||||
|
||||
> **default: `latest`**
|
||||
|
||||
A version string to specify the version of Nextflow to install. This version number will try to resolve using [npm's semantic versioning](https://github.com/npm/node-semver), so
|
||||
|
||||
- `version: 21`
|
||||
- `version: 21.10`
|
||||
- `version: 21.10.6`
|
||||
|
||||
will all download Nextflow version 21.10.6 as of 13 June 2022. Since Nextflow does not use true semantic versioning, you should **always** specify at least the minor version (e.g. `version: 21.10`).
|
||||
|
||||
Edge releases are resolved as pre-release, see <https://github.com/npm/node-semver#prerelease-tags> for more details. In short, in nearly all cases, passing an `-edge` release to this action will need to specify the _exact_ edge release targeted.
|
||||
|
||||
There are three (technically four) aliases to assist in choosing up-to-date Nextflow versions.
|
||||
|
||||
- `version: latest-stable` (alias `version: latest`)
|
||||
|
||||
This will download the latest _stable_ release of Nextflow.
|
||||
|
||||
- `version: latest-edge`
|
||||
|
||||
This will download the latest _edge_ release of Nextflow. Note that edge releases may be _older_ than the latest stable release. See https://github.com/nextflow-io/nextflow/issues/2467
|
||||
|
||||
- `version: latest-everything`
|
||||
|
||||
This will download the latest release of Nextflow, regardless of stable/edge status.
|
||||
|
||||
### `all`
|
||||
|
||||
> **default: `false`**
|
||||
|
||||
A boolean deciding whether to download the "all versions" distribution of Nextflow. May be useful for running tests against multiple versions downstream.
|
||||
|
||||
### `token`
|
||||
|
||||
> **default: `${{ secrets.GITHUB_TOKEN }}`**
|
||||
|
||||
This action locates the releases based upon the GitHub API, and requires an access token. The default token provided with all GitHub actions should be sufficient for all use cases.
|
||||
|
||||
## Outputs
|
||||
|
||||
There are no outputs from this action.
|
Loading…
Reference in a new issue