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https://github.com/MillironX/setup-nextflow.git
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Add initial workflow script
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129
index.js
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129
index.js
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const core = require("@actions/core");
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const github = require("@actions/github");
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const semver = require("semver");
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const tc = require("@actions/tool-cache");
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const fs = require("fs");
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const retry = require("async-retry");
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const NEXTFLOW_REPO = { owner: "nextflow-io", repo: "nextflow" };
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async function all_nf_releases(ok) {
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const { data: releases } = await ok.rest.repos.listReleases(NEXTFLOW_REPO);
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return releases;
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}
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async function latest_stable_release_data(ok) {
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const { data: stable_release } = await ok.rest.repos.getLatestRelease(
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NEXTFLOW_REPO
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);
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return stable_release;
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}
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async function release_data(version, ok) {
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// Setup tag-based filtering
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filter = (r) => {
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return semver.satisfies(r.tag_name, version, true);
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};
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// Check if the user passed a 'latest*' tag, and override filtering
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// accordingly
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if (version.includes("latest")) {
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if (version.includes("-everything")) {
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// No filtering
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filter = (r) => {
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return true;
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};
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} else if (version.includes("-edge")) {
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filter = (r) => {
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return r.tag_name.endsWith("-edge");
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};
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} else {
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// This is special: passing 'latest' or 'latest-stable' allows us to use
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// the latest stable GitHub release direct from the API
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stable_release = await latest_stable_release_data(ok);
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return stable_release;
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}
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}
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// Get all the releases
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const all_releases = await all_nf_releases(ok);
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matching_releases = all_releases.filter(filter);
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matching_releases.sort(function (x, y) {
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semver.compare(x.tag_name, y.tag_name, true);
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});
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return matching_releases[0];
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}
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function nextflow_bin_url(release, get_all) {
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const release_assets = release.assets;
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const all_asset = release_assets.filter((a) => {
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return a.browser_download_url.endsWith("-all");
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})[0];
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const regular_asset = release_assets.filter((a) => {
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return a.name == "nextflow";
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})[0];
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const dl_asset = get_all ? all_asset : regular_asset;
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return dl_asset.browser_download_url;
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}
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async function run() {
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// Setup the API
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let octokit = {};
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try {
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const token = core.getInput("token");
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octokit = github.getOctokit(token);
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} catch (e) {
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core.setFailed(
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`Could not authenticate to GitHub Releases API with provided token\n${e.message}`
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);
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}
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// Get the release info for the desired release
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let release = {};
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try {
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const version = core.getInput("version");
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release = release_data(version, octokit);
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} catch (e) {
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core.setFailed(
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`Could not retrieve Nextflow release matching ${version}.\n${e.message}`
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);
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}
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// Get the download url for the desired release
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let url = "";
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try {
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const get_all = core.getBooleanInput("all");
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url = nextflow_bin_url(release, get_all);
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} catch (e) {
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core.setFailed(`Could not parse the download URL\n${e.message}`);
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}
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// Download Nextflow and add it to path
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let nf_path = "";
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try {
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const temp_install_dir = fs.mkdtempSync(`nextflow`);
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nf_path = await retry(
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async (bail) => {
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return await tc.downloadTool(url, `${temp_install_dir}/nextflow`);
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},
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{
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onRetry: (err) => {
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core.debug(`Download of ${url} failed, trying again. Error: ${err}`);
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},
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}
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);
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core.addPath(nf_path);
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} catch (e) {
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core.setFailed(e.message);
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}
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}
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run();
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