From 7e43c4af0ee3e5827718a808a8e7de169a7c99b9 Mon Sep 17 00:00:00 2001
From: mashehu <mashehu3@gmail.com>
Date: Wed, 11 Oct 2023 16:29:12 +0200
Subject: [PATCH] Fail instead of warn, when `nextflow help` doesn't work

---
 src/main.ts | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/src/main.ts b/src/main.ts
index 6fe3913..1ab2485 100644
--- a/src/main.ts
+++ b/src/main.ts
@@ -94,9 +94,8 @@ async function run(): Promise<void> {
     await exec.exec("nextflow", ["help"])
   } catch (e: unknown) {
     if (e instanceof Error) {
-      core.warning(
-        "Nextflow appears to have installed correctly, but an error was thrown while running it."
-      )
+      // fail workflow if Nextflow run does not succeed
+      core.setFailed(`Could not run 'nextflow help'. Error: ${e.message}`)
     }
   }
 }