d8ab760f18
chore: Remove unused imports
2024-01-21 20:57:22 -06:00
803f3d4782
feat: Add throttling to OctkitWrapper
2024-01-21 20:57:22 -06:00
0e885a8e09
chore: Update GitHub actions package to v6.0.0
...
The GitHub actions API changes the underlying type structure to allow
for plugins like the throttling plugin at v6, so update to that version.
2024-01-21 20:57:22 -06:00
120ab3178f
feat: Add max-retries parameter to action inputs
2024-01-21 20:57:22 -06:00
a60acb2a32
feat: Add cooldown parameter to action inputs
2024-01-21 20:57:22 -06:00
37825f6967
chore: Install Octokit throttling plugin package
2024-01-21 20:57:22 -06:00
mashehu
b30f81e0d5
add todo item back
2024-01-12 18:02:02 +00:00
mashehu
a082e105b0
make linter happy
2024-01-12 18:02:02 +00:00
aedbf9a630
fix: Support versions of Nextflow without "all" variants
2024-01-12 18:02:02 +00:00
99c654d38a
fix: Add check for non-semver version strings in cache check
2024-01-12 18:02:02 +00:00
f65da33a7d
test: Update version checking tests
2024-01-12 18:02:02 +00:00
85718639f5
test: Update API consistency tests
2024-01-12 18:02:02 +00:00
670f4c751c
refactor: Update main script to use NextflowRelease objects
2024-01-12 18:02:02 +00:00
2483bb745d
refactor: Outsource API calls to OctokitWrapper
2024-01-12 18:02:02 +00:00
2a5cf63744
docs: Clarify why CAPSULE_LOG is set
2024-01-12 18:02:02 +00:00
3e1cca9d8c
refactor: Add and remove imports from main script
2024-01-12 18:02:02 +00:00
9a573cd481
refactor: Make install_nextflow work using NextflowRelease objects
2024-01-12 18:02:02 +00:00
5a5c42e549
refactor: Make get_nextflow_release work using NextflowRelease objects
2024-01-12 18:02:02 +00:00
bc65c05e25
refactor: Make tag filtering work on NextflowRelease objects
2024-01-12 18:02:02 +00:00
cdb0393711
refactor!: Move all Octokit code to own file
...
Separation of concerns. We want to completely separate the internals of
Octokit from this application, so move any reference/call to Octokit into
its own file to symbolize that.
2024-01-12 18:02:02 +00:00
ca8fcaccab
feat: Add nextflow_release function
...
WIth the goal being to convert Octokit data into NextflowRelease objects,
create a function that can do that in one line.
2024-01-12 18:02:02 +00:00
a97128956e
refactor: Move nextflow_bin_url function to NextflowRelease.ts
...
Nextflow binary URLs should be stored in the new NextflowRelease object, so
it should essentially be private for the NextflowRelease type. Move the
function to that file to signify that (but retain export for testing
purposes).
2024-01-12 18:02:02 +00:00
7cc27d1095
feat: Add NextflowRelease type
2024-01-12 18:02:02 +00:00
d736e9561d
docs: Add codecov badge to README
2023-10-31 01:42:06 +00:00
71753bca1d
feat: Add codecov action to test workflow
2023-10-31 01:42:06 +00:00
4499488e7d
feat: Add coverage reporting to test protocol
2023-10-31 01:42:06 +00:00
1f1a43fb20
chore: Add c8 to dev dependencies
2023-10-31 01:42:06 +00:00
99243fb566
chore: Bump version number in package files
2023-10-26 02:45:41 +00:00
b9b7d187dd
chore: Update CHANGELOG for v1.4.0
2023-10-26 02:45:41 +00:00
Edmund Miller
441990da28
Merge pull request #23 from mashehu/break-on-error
...
Fail instead of warn, when `nextflow help` doesn't work
2023-10-11 13:36:11 -05:00
mashehu
7e43c4af0e
Fail instead of warn, when nextflow help doesn't work
2023-10-11 16:29:12 +02:00
8e5e5dbd4c
art: Add nf-core logo to README
2023-08-11 12:20:28 -05:00
Robrecht Cannoodt
2008cb75f6
no matrix is specified for 'test-14'
2023-07-10 21:41:26 -05:00
Edmund Miller
b77a1defc2
Merge pull request #15 from data-intuitive/run-unit-test-in-ci
...
Fix testing ci
2023-06-30 10:10:57 -05:00
Robrecht Cannoodt
e066eb124a
Add helper function for checking the latest releases in the unit tests ( #15 ).
2023-06-28 11:07:13 +02:00
Robrecht Cannoodt
7136a6f06e
update more releases
2023-06-28 11:07:13 +02:00
Robrecht Cannoodt
07f474dd40
Fix release version check in unit test ( #15 ).
2023-06-28 11:07:13 +02:00
Robrecht Cannoodt
c6daa302be
Fix testing ci
2023-06-28 11:07:13 +02:00
Edmund Miller
62561112a2
ci: Reorganize when maximize-build-space is ran
2023-06-23 14:39:47 -05:00
Edmund Miller
3323654b16
ci: Add a test for PR #14
2023-06-23 14:37:20 -05:00
Edmund Miller
b9495c9762
Merge pull request #14 from data-intuitive/add-try-catch
...
Add try catch to fs.renameSync
2023-06-23 14:36:56 -05:00
Robrecht Cannoodt
be72b1dc0f
If fs.renameSync fails (e.g. because source and destination files are on different partitions), try fs.copySync and fs.unlinkSync instead.
2023-06-22 09:18:37 +02:00
519edf8749
refactor: Add redirect for publishing action
...
The publishing action assumes that main in package.json points to the
entrypoint of the action. Since v1.2.0, however, that is no longer the
case. Rather than try a new system (or dive deep into the internals of
npm and what every directive means), we'll trick the action into uploading
the correct script by modifying the package.json file right before upload.
Add that hack.
2023-05-23 16:06:28 -05:00
56d7f33dac
chore: Upgrade package version number
2023-05-23 14:17:57 +00:00
dfa1b1c089
fix: Change README to point to latest version
2023-05-23 14:17:57 +00:00
5d4efee5a2
chore: Update CHANGELOG
2023-05-23 14:17:57 +00:00
fe166f9eb6
refactor: Add short-circuit cache checking for already-installed Nextflow
2023-05-18 12:49:37 +00:00
545262d3b9
feat: Add tool-cache checking function
2023-05-18 12:49:37 +00:00
Edmund Miller
0aeab8d284
style: Use double-quotes
...
Co-authored-by: ewels <ewels@users.noreply.github.com>
2022-11-17 19:32:25 +00:00
Edmund Miller
05aef69bc1
ci: Don't double run jobs
2022-11-17 19:32:25 +00:00
