2a5cf63744
docs: Clarify why CAPSULE_LOG is set
2024-01-12 18:02:02 +00:00
3e1cca9d8c
refactor: Add and remove imports from main script
2024-01-12 18:02:02 +00:00
9a573cd481
refactor: Make install_nextflow work using NextflowRelease objects
2024-01-12 18:02:02 +00:00
5a5c42e549
refactor: Make get_nextflow_release work using NextflowRelease objects
2024-01-12 18:02:02 +00:00
bc65c05e25
refactor: Make tag filtering work on NextflowRelease objects
2024-01-12 18:02:02 +00:00
cdb0393711
refactor!: Move all Octokit code to own file
...
Separation of concerns. We want to completely separate the internals of
Octokit from this application, so move any reference/call to Octokit into
its own file to symbolize that.
2024-01-12 18:02:02 +00:00
ca8fcaccab
feat: Add nextflow_release function
...
WIth the goal being to convert Octokit data into NextflowRelease objects,
create a function that can do that in one line.
2024-01-12 18:02:02 +00:00
a97128956e
refactor: Move nextflow_bin_url function to NextflowRelease.ts
...
Nextflow binary URLs should be stored in the new NextflowRelease object, so
it should essentially be private for the NextflowRelease type. Move the
function to that file to signify that (but retain export for testing
purposes).
2024-01-12 18:02:02 +00:00
7cc27d1095
feat: Add NextflowRelease type
2024-01-12 18:02:02 +00:00
d736e9561d
docs: Add codecov badge to README
2023-10-31 01:42:06 +00:00
71753bca1d
feat: Add codecov action to test workflow
2023-10-31 01:42:06 +00:00
4499488e7d
feat: Add coverage reporting to test protocol
2023-10-31 01:42:06 +00:00
1f1a43fb20
chore: Add c8 to dev dependencies
2023-10-31 01:42:06 +00:00
99243fb566
chore: Bump version number in package files
2023-10-26 02:45:41 +00:00
b9b7d187dd
chore: Update CHANGELOG for v1.4.0
2023-10-26 02:45:41 +00:00
Edmund Miller
441990da28
Merge pull request #23 from mashehu/break-on-error
...
Fail instead of warn, when `nextflow help` doesn't work
2023-10-11 13:36:11 -05:00
mashehu
7e43c4af0e
Fail instead of warn, when nextflow help doesn't work
2023-10-11 16:29:12 +02:00
8e5e5dbd4c
art: Add nf-core logo to README
2023-08-11 12:20:28 -05:00
Robrecht Cannoodt
2008cb75f6
no matrix is specified for 'test-14'
2023-07-10 21:41:26 -05:00
Edmund Miller
b77a1defc2
Merge pull request #15 from data-intuitive/run-unit-test-in-ci
...
Fix testing ci
2023-06-30 10:10:57 -05:00
Robrecht Cannoodt
e066eb124a
Add helper function for checking the latest releases in the unit tests ( #15 ).
2023-06-28 11:07:13 +02:00
Robrecht Cannoodt
7136a6f06e
update more releases
2023-06-28 11:07:13 +02:00
Robrecht Cannoodt
07f474dd40
Fix release version check in unit test ( #15 ).
2023-06-28 11:07:13 +02:00
Robrecht Cannoodt
c6daa302be
Fix testing ci
2023-06-28 11:07:13 +02:00
Edmund Miller
62561112a2
ci: Reorganize when maximize-build-space is ran
2023-06-23 14:39:47 -05:00
Edmund Miller
3323654b16
ci: Add a test for PR #14
2023-06-23 14:37:20 -05:00
Edmund Miller
b9495c9762
Merge pull request #14 from data-intuitive/add-try-catch
...
Add try catch to fs.renameSync
2023-06-23 14:36:56 -05:00
Robrecht Cannoodt
be72b1dc0f
If fs.renameSync fails (e.g. because source and destination files are on different partitions), try fs.copySync and fs.unlinkSync instead.
2023-06-22 09:18:37 +02:00
519edf8749
refactor: Add redirect for publishing action
...
The publishing action assumes that main in package.json points to the
entrypoint of the action. Since v1.2.0, however, that is no longer the
case. Rather than try a new system (or dive deep into the internals of
npm and what every directive means), we'll trick the action into uploading
the correct script by modifying the package.json file right before upload.
Add that hack.
2023-05-23 16:06:28 -05:00
56d7f33dac
chore: Upgrade package version number
2023-05-23 14:17:57 +00:00
dfa1b1c089
fix: Change README to point to latest version
2023-05-23 14:17:57 +00:00
5d4efee5a2
chore: Update CHANGELOG
2023-05-23 14:17:57 +00:00
fe166f9eb6
refactor: Add short-circuit cache checking for already-installed Nextflow
2023-05-18 12:49:37 +00:00
545262d3b9
feat: Add tool-cache checking function
2023-05-18 12:49:37 +00:00
Edmund Miller
0aeab8d284
style: Use double-quotes
...
Co-authored-by: ewels <ewels@users.noreply.github.com>
2022-11-17 19:32:25 +00:00
Edmund Miller
05aef69bc1
ci: Don't double run jobs
2022-11-17 19:32:25 +00:00
Edmund Miller
57e49670a9
ci: Create seperate dev workflow checks
2022-11-17 19:32:25 +00:00
Edmund Miller
46187cd528
test: Add main test from template
...
Doesn't work yet though
2022-11-17 19:32:25 +00:00
Edmund Miller
95a4337530
style: Add simple-import-sort and run
2022-11-17 19:32:25 +00:00
Edmund Miller
981cd4fc2e
style: Set bracketSpacing to true
2022-11-17 19:32:25 +00:00
Edmund Miller
7c79f790e0
chore: Clean up typing in tests
2022-11-17 19:32:25 +00:00
Edmund Miller
c3424c52c4
chore: Clean up release sorting types
2022-11-17 19:32:25 +00:00
Edmund Miller
93ff0f7ef2
test: Write tests for release_data function
2022-11-17 19:32:25 +00:00
Edmund Miller
c19a8b88ef
chore: handle octokit typing
2022-11-17 19:32:25 +00:00
Edmund Miller
7a0ec2a9b4
chore: Clean up a bunch of object references
...
https://medium.com/@kgdilipchandana/how-to-solve-error-ts2339-property-label-does-not-exist-on-type-in-angular-5-db01843ef6a
2022-11-17 19:32:25 +00:00
Edmund Miller
955a936296
chore: Clean up some catch errors
2022-11-17 19:32:25 +00:00
Edmund Miller
a14c1ba3a6
ci: Add build step
2022-11-17 19:32:25 +00:00
Edmund Miller
edde65cf1e
build: lib => lib/src
2022-11-17 19:32:25 +00:00
Edmund Miller
ab89b450a6
chore: Remove eslint failure for ava import
2022-11-17 19:32:25 +00:00
Edmund Miller
3f231d1a10
ci: Update hoops to jump through
2022-11-17 19:32:25 +00:00
