millironx/setup-nextflow
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Author SHA1 Message Date
Thomas A. Christensen II
a0546498bf
test: Add test for install_nextflow 2024-02-02 21:45:31 -06:00
Thomas A. Christensen II
3b23b7abfe
chore: Add ability to deal with temporary files generated by tests 
The "install_nextflow" tests generate a new install of Nextflow every time
 they are run based on the "RUNNER_TEMP" environment variable. Deal with
this by adding our RUNNER_TEMP variable to the ava config and making sure
none of these installs get committed.
 2024-02-02 21:45:29 -06:00
Thomas A. Christensen II
d3023422c1
test: Add tests for Nextflow release version resolver 2024-02-02 21:45:28 -06:00
Thomas A. Christensen II
eaeab23c1a
feat!: Remove url resolver for NextflowRelease 2024-02-02 21:45:27 -06:00
Thomas A. Christensen II
5d1d40a4ea
feat!: Remove Octkit conversion function for NextflowRelease 2024-02-02 21:45:26 -06:00
Thomas A. Christensen II
20ed9d58ea
test!: Remove testing utils for getting GitHub token 
This is no longer needed under the new API.
 2024-02-02 21:45:25 -06:00
Thomas A. Christensen II
e8d313e9d2
chore!: Remove octokit throttling dependency 2024-02-02 21:45:24 -06:00
Thomas A. Christensen II
34cd96c6c5
feat!: Remove Octokit API 2024-02-02 21:45:23 -06:00
Thomas A. Christensen II
29edf6bed3
refactor!: Replace Octokit API with nf-core API in main script 2024-02-02 21:45:22 -06:00
Thomas A. Christensen II
1927f1a07e
refactor!: Rename NextflowRelease.allBinaryURL to NextflowRelease.downloadUrlAll 
Another API consistency update.
 2024-02-02 21:45:20 -06:00
Thomas A. Christensen II
21ad9d9cb6
refactor!: Rename NextflowRelease.binaryURL to NextflowRelease.downloadURL 
Another API consistency change.
 2024-02-02 21:45:19 -06:00
Thomas A. Christensen II
525dd341cb
refactor!: Rename NextflowRelease.versionNumber to NextflowRelease.version 
This is to preserve consistency with the new API
 2024-02-02 21:45:18 -06:00
Thomas A. Christensen II
31898fbe2b
feat!: Remove the "latest-*" version resolvers from get_nextflow_release 
Not needed due to the new API
 2024-02-02 21:45:18 -06:00
Thomas A. Christensen II
2145dbec41
fix: Fix the version number debug log 2024-02-02 21:45:16 -06:00
Thomas A. Christensen II
243e2d8f57
test!: Remove version resolving tests for "latest*" versions 
This functionality is now offloaded to the API.
 2024-02-02 21:45:15 -06:00
Thomas A. Christensen II
76b5d90248
feat: Make get_nextflow_release compatible with arrays 
Although it seems like we're moving backwards, the new API only supports a
single data dump. I still like the iterative nature rather, so tack on
array support.
 2024-02-02 21:45:14 -06:00
Thomas A. Christensen II
34b2731a55
feat: Add nf-core website API wrapper 
Basically, a stand-in for OctoKit, but smarter.
 2024-02-02 21:45:12 -06:00
Thomas A. Christensen II
e259f2a032
feat: Add optional published_at field to NextflowRelease type 
Per @ewels request, the API on nf-co.re includes a "published_at" field
with the date of each release. For future compatibility without breaking
anything current, add an optional field that can handle this additional
information.
 2024-02-02 21:45:10 -06:00
Thomas A. Christensen II
d4db5065bf
chore: Update CHANGELOG 2024-02-02 21:42:16 -06:00
Thomas A. Christensen II
f65f3889f1
chore: Update lint-staged config to also lint TypeScript files 2024-02-02 21:26:01 -06:00
Thomas A. Christensen II
92d5fbf3ef
chore: Initialize husky 2024-02-02 21:24:46 -06:00
Thomas A. Christensen II
3fdf4e64ae
chore: Install lint-staged 2024-02-02 21:19:11 -06:00
Thomas A. Christensen II
f4e0bf4b97
chore: Install husky 2024-02-02 21:15:03 -06:00
Thomas A. Christensen II
34c114ad83
chore: Update CHANGELOG 2024-02-02 21:05:27 -06:00
Thomas A. Christensen II
78ff7697d2
feat: Add working launch.json file for debugging in VSCode 2024-02-02 21:05:26 -06:00
Thomas A. Christensen II
6174369e79
feat: Add sourcemaps to tsconfig 
This feature is needed by the VSCode debugger.
 2024-02-02 21:05:24 -06:00
Thomas A. Christensen II
199dd22747
chore: Update CHANGELOG 2024-02-02 20:05:20 -06:00
Thomas A. Christensen II
a4976909b6
feat: Add actrc file 2024-02-02 19:56:42 -06:00
Thomas A. Christensen II
74ebaacc41
feat: Add Java install if using act 
For some reason, I need to pin the Java install when using act. This is not
needed when using the GitHub Actions runner, so add an escape clause to
only run this extra step when using act.
 2024-02-02 19:55:15 -06:00
Thomas A. Christensen II
222380fece
refactor: Rename integration testing CI workflows to 'example-usage' 
We have two CI workflows with the name "test" (three if you count
"test-14"). This ambiguates the job name, and results in act running both
unit tests and integration tests when running `act -j test`. Fix that by
changing the names.
 2024-02-02 19:52:21 -06:00
Thomas A. Christensen II
ebae0f3159
chore: Update CHANGELOG for v1.5.1 2024-01-30 10:46:04 -06:00
Thomas A. Christensen II
c4fb7bfc75
chore: bump version in package json files 2024-01-30 10:44:39 -06:00
Thomas A. Christensen II
ba0bc84592 chore: Update CHANGELOG 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
3e5019b784 ci: Update minimum node version in ci 
The pagination changes require Node.js 18 or greater, so update the test
apparatus to use the latest LTS version of Node.
 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
da56dbefc9 test: Refactor API tests to work with combined functions 
Now that we are lazy-loading the API pages, OctokitWrapper is handling the
conversion to NextflowRelease in one function call. This means we can't test
the API schema. That should be fine as we pinned the API version. We can
test that the resulting objects for validity, so do that.
 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
67a9c84bd7 feat: Pin GitHub API version 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
a5dd242af1 feat!: Remove tag_filter function 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
2850a8553a refactor: Replace pull_releases function with iterator generator 
Although the types are different, the intent is the same, so I think the
name is fitting.
 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
91ef9fb65a test: Update testing framework to support iterators 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
737834224d refactor: Swap list filtering with lazy iterations 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
2f9c53c090 fix: Make iterator work right 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
4af33538f0 feat: Add lazy release iterator 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
c71f252745 feat: Add using GitHub API latest feature back in 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
82d97e2453 refactor: Place latest stable release conversion inline 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
7473a3926d refactor: Use callback for octokit conversion 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
251e9bd445 feat: Add larger pagination to octokit-wrapper 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
d52c98d592 chore: Bump version in CHANGELOG 2024-01-21 22:09:10 -06:00
Thomas A. Christensen II
77d8bbb78a chore: Bump version is package.json to v1.5.0 2024-01-21 22:09:10 -06:00
Thomas A. Christensen II
2098c3cdb2 feat!: Remove manual API calling tests 
These tests are no longer used since the switch to OctokitWrapper, and
conflict with packages required for the implementation of throttling, so
remove them.
 2024-01-21 20:57:22 -06:00
Thomas A. Christensen II
8982670453 chore: Update CHANGELOG 2024-01-21 20:57:22 -06:00