millironx/setup-nextflow
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Author SHA1 Message Date
Thomas A. Christensen II
c8007d8926
chore: Remove GitHub token from README 2024-02-03 18:53:09 -06:00
Thomas A. Christensen II
65c19a91d4
chore: Update CHANGELOG 2024-02-03 18:53:08 -06:00
Thomas A. Christensen II
3267bfebb3
wip: Add build to repo for debugging purposes 
This should be removed before merging. The only reason I'm doing this is
because Github actions provides no other way for me to test this action at
the scale that we need. If you are reading this past the v2.0 release,
then something went terribly wrong.
 2024-02-03 18:53:07 -06:00
Thomas A. Christensen II
ca6f80e650
chore!: Remove unused parameters from action.yml 2024-02-03 18:53:06 -06:00
Thomas A. Christensen II
f4b5948847
test: Add test for install_nextflow 2024-02-03 18:53:05 -06:00
Thomas A. Christensen II
6780729a18
chore: Add ability to deal with temporary files generated by tests 
The "install_nextflow" tests generate a new install of Nextflow every time
 they are run based on the "RUNNER_TEMP" environment variable. Deal with
this by adding our RUNNER_TEMP variable to the ava config and making sure
none of these installs get committed.
 2024-02-03 18:53:04 -06:00
Thomas A. Christensen II
9dfa0f4329
test: Add tests for Nextflow release version resolver 2024-02-03 18:53:03 -06:00
Thomas A. Christensen II
6403017471
feat!: Remove url resolver for NextflowRelease 2024-02-03 18:53:02 -06:00
Thomas A. Christensen II
aef834d8bc
feat!: Remove Octkit conversion function for NextflowRelease 2024-02-03 18:53:01 -06:00
Thomas A. Christensen II
c8b05abe99
test!: Remove testing utils for getting GitHub token 
This is no longer needed under the new API.
 2024-02-03 18:53:00 -06:00
Thomas A. Christensen II
c44d750e6f
chore!: Remove octokit throttling dependency 2024-02-03 18:52:59 -06:00
Thomas A. Christensen II
b51df5d41b
feat!: Remove Octokit API 2024-02-03 18:52:58 -06:00
Thomas A. Christensen II
d72644926c
refactor!: Replace Octokit API with nf-core API in main script 2024-02-03 18:52:57 -06:00
Thomas A. Christensen II
0e483a63dd
refactor!: Rename NextflowRelease.allBinaryURL to NextflowRelease.downloadUrlAll 
Another API consistency update.
 2024-02-03 18:52:56 -06:00
Thomas A. Christensen II
085e9ce75c
refactor!: Rename NextflowRelease.binaryURL to NextflowRelease.downloadURL 
Another API consistency change.
 2024-02-03 18:52:55 -06:00
Thomas A. Christensen II
9e1210850f
refactor!: Rename NextflowRelease.versionNumber to NextflowRelease.version 
This is to preserve consistency with the new API
 2024-02-03 18:52:54 -06:00
Thomas A. Christensen II
8e25d74dc3
feat!: Remove the "latest-*" version resolvers from get_nextflow_release 
Not needed due to the new API
 2024-02-03 18:52:53 -06:00
Thomas A. Christensen II
f6aadba037
fix: Fix the version number debug log 2024-02-03 18:52:52 -06:00
Thomas A. Christensen II
bad5f3ad62
test!: Remove version resolving tests for "latest*" versions 
This functionality is now offloaded to the API.
 2024-02-03 18:52:51 -06:00
Thomas A. Christensen II
714c30554f
feat: Make get_nextflow_release compatible with arrays 
Although it seems like we're moving backwards, the new API only supports a
single data dump. I still like the iterative nature rather, so tack on
array support.
 2024-02-03 18:52:51 -06:00
Thomas A. Christensen II
ba9bc8bd26
feat: Add nf-core website API wrapper 
Basically, a stand-in for OctoKit, but smarter.
 2024-02-03 18:52:50 -06:00
Thomas A. Christensen II
a1e3fd897a
feat: Add optional published_at field to NextflowRelease type 
Per @ewels request, the API on nf-co.re includes a "published_at" field
with the date of each release. For future compatibility without breaking
anything current, add an optional field that can handle this additional
information.
 2024-02-03 18:32:14 -06:00
Thomas A. Christensen II
3c145a195b chore: Update CHANGELOG 2024-02-03 11:22:16 -06:00
Thomas A. Christensen II
4fb3dae2b8 chore: Add deprecation messages for GitHub API parameters 2024-02-03 11:22:16 -06:00
Thomas A. Christensen II
15cd07b8f0 chore: Update CHANGELOG 2024-02-03 11:20:30 -06:00
Thomas A. Christensen II
725f631c7c chore: Update lint-staged config to also lint TypeScript files 2024-02-03 11:20:30 -06:00
Thomas A. Christensen II
0898720a28 chore: Initialize husky 2024-02-03 11:20:30 -06:00
Thomas A. Christensen II
73885d551e chore: Install lint-staged 2024-02-03 11:20:30 -06:00
Thomas A. Christensen II
0512776f32 chore: Install husky 2024-02-03 11:20:30 -06:00
Thomas A. Christensen II
791b428d55 chore: Update CHANGELOG 2024-02-03 11:17:01 -06:00
Thomas A. Christensen II
5a8fee0c89 feat: Add working launch.json file for debugging in VSCode 2024-02-03 11:17:01 -06:00
Thomas A. Christensen II
d5ff89d8bb feat: Add sourcemaps to tsconfig 
This feature is needed by the VSCode debugger.
 2024-02-03 11:17:01 -06:00
Thomas A. Christensen II
a46a611717 chore: Update CHANGELOG 2024-02-03 11:16:01 -06:00
Thomas A. Christensen II
b9e2acafe8 feat: Add actrc file 2024-02-03 11:16:01 -06:00
Thomas A. Christensen II
58b277c92b feat: Add Java install if using act 
For some reason, I need to pin the Java install when using act. This is not
needed when using the GitHub Actions runner, so add an escape clause to
only run this extra step when using act.
 2024-02-03 11:16:01 -06:00
Thomas A. Christensen II
a0a0a4327f refactor: Rename integration testing CI workflows to 'example-usage' 
We have two CI workflows with the name "test" (three if you count
"test-14"). This ambiguates the job name, and results in act running both
unit tests and integration tests when running `act -j test`. Fix that by
changing the names.
 2024-02-03 11:16:01 -06:00
Thomas A. Christensen II
ebae0f3159
chore: Update CHANGELOG for v1.5.1 2024-01-30 10:46:04 -06:00
Thomas A. Christensen II
c4fb7bfc75
chore: bump version in package json files 2024-01-30 10:44:39 -06:00
Thomas A. Christensen II
ba0bc84592 chore: Update CHANGELOG 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
3e5019b784 ci: Update minimum node version in ci 
The pagination changes require Node.js 18 or greater, so update the test
apparatus to use the latest LTS version of Node.
 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
da56dbefc9 test: Refactor API tests to work with combined functions 
Now that we are lazy-loading the API pages, OctokitWrapper is handling the
conversion to NextflowRelease in one function call. This means we can't test
the API schema. That should be fine as we pinned the API version. We can
test that the resulting objects for validity, so do that.
 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
67a9c84bd7 feat: Pin GitHub API version 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
a5dd242af1 feat!: Remove tag_filter function 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
2850a8553a refactor: Replace pull_releases function with iterator generator 
Although the types are different, the intent is the same, so I think the
name is fitting.
 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
91ef9fb65a test: Update testing framework to support iterators 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
737834224d refactor: Swap list filtering with lazy iterations 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
2f9c53c090 fix: Make iterator work right 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
4af33538f0 feat: Add lazy release iterator 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
c71f252745 feat: Add using GitHub API latest feature back in 2024-01-30 10:42:55 -06:00
Thomas A. Christensen II
82d97e2453 refactor: Place latest stable release conversion inline 2024-01-30 10:42:55 -06:00